# List of top-scoring protein chains for T0449.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1snzA	344	5.70e-37	b.30.5.4	98930
1mmuA	347	5.96e-29	b.30.5.4	79303
1ns8A	347	1.40e-28	b.30.5.4	80709
1lurA	339	1.78e-28	b.30.5.4	84717
1ns4A	347	2.14e-28	b.30.5.4	80703
1ns7A	347	2.35e-28	b.30.5.4	80707
1nssA	347	2.67e-28	b.30.5.4	80716
1nszA	347	4.01e-28	b.30.5.4	80724
1nsuA	347	4.91e-28	b.30.5.4	80718
1z45A	699	4.08e-25	b.30.5.4,c.2.1.2	124427,124428
2cirA	297	9.98e-23		
1ygaA	342	1.32e-21		
2htaA	309	3.55e-20		
1jovA	270	5.74e-15	b.30.5.7	84192
1s9cA	298	3.117	d.38.1.4,d.38.1.4	118889,118890
1sd0A	357	6.279	a.83.1.1,d.128.1.2	105424,105425
1fobA	334	8.982	c.1.8.3	83255
1ndhA	272	13.19	b.43.4.2,c.25.1.1	25662,31552
1c8uA	285	21.33	d.38.1.3,d.38.1.3	38547,38548
2eixA	243	25.86		
2h0vA	338	26.84		
1y3tA	337	28.65	b.82.1.5	122600
1icpA	376	29.86	c.1.4.1	62270
2dwwA	114	36.79		
1ujpA	271	38.73	c.1.2.4	99462
1bg0A	356	40.51	a.83.1.1,d.128.1.2	18476,41211
1m15A	357	40.74	a.83.1.1,d.128.1.2	78368,78369
2ouoA	130	42.05		
1moeA	240	45.62	b.1.1.1,b.1.1.1	85030,85031
2nm1A	436	46.72	b.29.1.6,b.42.4.2	138369,138370
2q3rA	372	47.88	c.1.4.1	139801
1qx4A	274	48.20	b.43.4.2,c.25.1.1	104624,104625
1z0hA	438	50.38	b.29.1.6,b.42.4.2	124314,124315
1md7A	328	51.74	b.47.1.2,g.18.1.1	91243,91244
1md8A	329	56.20	b.47.1.2,g.18.1.1	91245,91246
1gpzA	399	58.82	b.47.1.2,g.18.1.1,g.18.1.1	70302,70303,70304
1h3pH	219	59.82	b.1.1.1,b.1.1.2	76648,76649
1gxrA	337	63.07	b.69.4.1	70722
1vhwA	253	63.65	c.56.2.1	100706
1i7pA	274	66.47	b.43.4.2,c.25.1.1	66048,66049
2ep7A	342	66.81		
2dg5A	366	70.89	d.153.1.6	131500
1rl9A	357	73.10	a.83.1.1,d.128.1.2	104979,104980
2cwlA	302	73.47	a.25.1.3	130927
1p52A	357	74.11	a.83.1.1,d.128.1.2	87792,87793
2h1tA	188	74.64		
2z8gA	549	79.39		
2dawA	154	79.97		
2i8nA	114	80.87		
1p50A	356	81.66	a.83.1.1,d.128.1.2	87786,87787
1i14A	221	85.38	c.61.1.1	71100
2v8tA	302	85.68		
2dzxA	248	86.62		
1zy8A	474	88.12