# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.10e-31 b.30.5.4 98930 1nszA 347 8.30e-31 b.30.5.4 80724 1lurA 339 8.77e-31 b.30.5.4 84717 1ygaA 342 1.62e-29 1z45A 699 1.92e-28 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.08e-26 2cirA 297 1.17e-25 1jovA 270 3.67e-23 b.30.5.7 84192 3bs6A 280 0.03810 3blcA 330 0.08300 2cqsA 842 0.1558 1yewA 382 3.082 1lf6A 684 4.294 a.102.1.5,b.30.5.5 77918,77919 2bgiA 272 4.861 1qhtA 775 6.275 c.55.3.5,e.8.1.1 33722,43011 2gudA 122 9.153 b.77.3.1 135732 2oqeA 660 9.238 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 3bgaA 1010 9.777 1a8pA 258 10.85 b.43.4.2,c.25.1.1 25654,31544 2b1xA 470 11.31 b.33.1.2,d.129.3.3 127675,127676 2r5kA 424 11.90 2q7dA 346 12.27 2rdyA 803 12.69 2r6hA 290 13.05 1nbcA 155 13.47 b.2.2.2 22390 1cfbA 205 14.46 b.1.2.1,b.1.2.1 21991,21992 1v7wA 807 14.73 a.102.1.4,b.30.5.3 108411,108412 1zjkA 403 16.40 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 3ch3X 265 16.95 2z5aB 420 18.42 2ix0A 663 19.13 1rqwA 207 20.90 b.25.1.1 97781 1ogoX 574 22.44 b.133.1.1,b.80.1.10 92925,92926 2eknA 159 22.51 2axcA 264 23.00 1ogiA 303 23.22 b.43.4.2,c.25.1.1 92914,92915 1fndA 314 23.25 b.43.4.2,c.25.1.1 25626,31516 1rc6A 261 23.77 b.82.1.11 97287 1n9eA 787 26.11 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1uliA 460 26.11 b.33.1.2,d.129.3.3 107921,107922 2qdxA 257 26.39 2p9wA 334 26.49 1qfjA 232 28.87 b.43.4.2,c.25.1.1 25655,31545 2rc5A 314 29.50 2f02A 323 30.81 c.72.1.1 132649 1ytqA 204 33.21 b.11.1.1,b.11.1.1 124012,124013 2pkfA 334 33.66 2geeA 203 34.19 1kcwA 1046 34.56 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2gysA 419 35.26 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1avaC 181 35.47 b.42.4.1 25604 1h54A 754 35.59 a.102.1.4,b.30.5.3 60634,60635 1v0aA 178 37.50 b.18.1.30 119815 1xhbA 472 37.91 b.42.2.1,c.68.1.17 115290,115291 1jz8A 1023 38.34 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2hlzA 312 41.40 1f60A 458 42.32 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2rk9A 145 42.40 1zy9A 564 44.83 b.30.5.11,c.1.8.13 125813,125814 2b5iC 199 44.83 b.1.2.1,b.1.2.1 127898,127899 1hs6A 611 45.79 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1okiA 210 46.74 b.11.1.1,b.11.1.1 93255,93256 1umkA 275 49.00 b.43.4.2,c.25.1.1 113312,113313 1qx4A 274 49.51 b.43.4.2,c.25.1.1 104624,104625 1eylA 186 49.57 b.42.4.1 25593 3ceyA 474 50.05 1dzlA 505 52.16 b.121.6.1 23586 1mpxA 615 52.68 b.18.1.13,c.69.1.21 85041,85042 2pd0A 223 53.46 1a6cA 513 54.33 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1eerB 227 55.21 b.1.2.1,b.1.2.1 22011,22012 3bpoC 314 56.56 1jayA 212 56.79 c.2.1.6 66478 2r6uA 148 57.05 2vj8A 611 58.43 1vj2A 126 60.85 b.82.1.10 100796 2fuqA 747 61.40 1ouwA 152 61.56 b.77.3.1 93571 2bivA 243 62.52 b.34.9.3,b.34.9.3 128592,128593 2r58A 265 62.76 2aprA 325 63.96 b.50.1.2 26819 2hftA 218 66.31 b.1.2.1,b.1.2.1 21951,21952 1wycA 392 66.74 1u6lA 149 66.87 d.32.1.7 113067 1fjrA 195 69.86 b.102.1.1 59855 1kw3B 292 73.87 d.32.1.3,d.32.1.3 77549,77550 1p4tA 155 74.66 f.4.1.1 87779 1zx4A 192 74.73 1nwzA 125 77.01 d.110.3.1 86370 3cjxA 165 78.65 2f69A 261 79.28 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 81.74 2re7A 134 83.22 1a8d 452 84.19 1qhqA 140 84.91 b.6.1.1 63326 2qc1B 212 87.11 1vclA 432 87.72 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2r9pA 224 88.26 1jmxB 349 89.94 b.69.2.2 66906