# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 5.67e-32 b.30.5.4 98930 1nszA 347 6.24e-31 b.30.5.4 80724 1lurA 339 8.27e-31 b.30.5.4 84717 1ygaA 342 7.41e-30 1z45A 699 1.03e-28 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.03e-26 2cirA 297 7.79e-26 1jovA 270 1.64e-23 b.30.5.7 84192 3bs6A 280 0.02782 3blcA 330 0.03491 1yewA 382 0.4754 2cqsA 842 0.8007 3bgaA 1010 3.138 1kcwA 1046 4.085 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2rc5A 314 4.481 2oqeA 660 6.375 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1zjkA 403 6.543 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1lf6A 684 7.610 a.102.1.5,b.30.5.5 77918,77919 1cfbA 205 7.902 b.1.2.1,b.1.2.1 21991,21992 2gudA 122 9.155 b.77.3.1 135732 2bgiA 272 10.94 1a8pA 258 12.77 b.43.4.2,c.25.1.1 25654,31544 1v7wA 807 13.59 a.102.1.4,b.30.5.3 108411,108412 2b1xA 470 14.35 b.33.1.2,d.129.3.3 127675,127676 1qhtA 775 15.36 c.55.3.5,e.8.1.1 33722,43011 1h54A 754 16.12 a.102.1.4,b.30.5.3 60634,60635 1eylA 186 18.20 b.42.4.1 25593 2r5kA 424 18.67 2r6hA 290 19.85 2ix0A 663 21.29 1nbcA 155 21.30 b.2.2.2 22390 1avaC 181 22.33 b.42.4.1 25604 1n9eA 787 22.47 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1okiA 210 22.90 b.11.1.1,b.11.1.1 93255,93256 2axcA 264 23.06 1xhbA 472 23.80 b.42.2.1,c.68.1.17 115290,115291 1jz8A 1023 23.94 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2p9wA 334 25.13 1rqwA 207 25.42 b.25.1.1 97781 1txkA 498 25.46 b.1.18.2,b.30.5.9 107425,107426 2rdyA 803 25.77 1ytqA 204 26.29 b.11.1.1,b.11.1.1 124012,124013 1h30A 422 28.75 b.29.1.4,b.29.1.4 76604,76605 1fndA 314 30.62 b.43.4.2,c.25.1.1 25626,31516 1qfjA 232 30.85 b.43.4.2,c.25.1.1 25655,31545 2f02A 323 31.29 c.72.1.1 132649 1f60A 458 32.18 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1a8d 452 32.47 2qdxA 257 32.62 2q7dA 346 33.50 1uliA 460 33.50 b.33.1.2,d.129.3.3 107921,107922 1ogiA 303 36.58 b.43.4.2,c.25.1.1 92914,92915 1zy9A 564 37.04 b.30.5.11,c.1.8.13 125813,125814 3bpoC 314 37.38 2z5aB 420 38.56 3cjxA 165 38.60 1nkgA 508 39.13 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1vclA 432 39.29 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2hlzA 312 40.35 2pd0A 223 40.85 2pkfA 334 42.29 2hbtA 247 42.31 1qx4A 274 42.35 b.43.4.2,c.25.1.1 104624,104625 1kbvA 327 42.63 b.6.1.3,b.6.1.3 68395,68396 2geeA 203 46.15 1nwzA 125 46.93 d.110.3.1 86370 2fuqA 747 48.19 1o7nB 194 52.74 d.17.4.4 81164 1ybiA 288 52.92 1eerB 227 53.26 b.1.2.1,b.1.2.1 22011,22012 1xe0A 114 53.72 b.121.3.1 115197 1umkA 275 54.28 b.43.4.2,c.25.1.1 113312,113313 1zdsA 336 55.81 b.6.1.3,b.6.1.3 124952,124953 2ihoA 293 56.54 1ouwA 152 58.08 b.77.3.1 93571 1rowA 109 58.76 b.1.11.2 97676 2r58A 265 59.13 1vj2A 126 59.87 b.82.1.10 100796 1i31A 314 60.37 b.2.7.1 22481 1mpxA 615 61.50 b.18.1.13,c.69.1.21 85041,85042 1p4tA 155 63.37 f.4.1.1 87779 2rk9A 145 64.38 1dzlA 505 64.54 b.121.6.1 23586 1z9nA 177 64.62 2pia 321 64.93 2bivA 243 65.13 b.34.9.3,b.34.9.3 128592,128593 1f6fB 210 68.58 b.1.2.1,b.1.2.1 22033,22034 2f69A 261 69.99 b.76.2.1,b.85.7.1 133035,133036 2r6uA 148 70.97 2jesA 503 72.20 2aqmA 154 72.45 1rc6A 261 73.50 b.82.1.11 97287 2rfiA 285 75.79 2vj8A 611 76.57 1lmiA 131 77.13 b.1.19.1 78098 2gbwA 454 77.78 2qc1B 212 79.05 2b5iC 199 80.18 b.1.2.1,b.1.2.1 127898,127899 1ajkA 214 80.60 b.29.1.2 24176 1ogoX 574 80.69 b.133.1.1,b.80.1.10 92925,92926 1u6lA 149 80.73 d.32.1.7 113067 3bdwA 123 80.79 1oe1A 336 81.53 b.6.1.3,b.6.1.3 86891,86892 2jixB 225 81.80 1a6cA 513 81.91 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1jayA 212 82.12 c.2.1.6 66478 1xvqA 175 83.36 c.47.1.10 116094 2q3zA 687 87.74