# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 5.19e-31 b.30.5.4 98930 1lurA 339 3.47e-30 b.30.5.4 84717 1nszA 347 7.60e-30 b.30.5.4 80724 1ygaA 342 1.45e-28 1z45A 699 6.34e-28 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 3.72e-26 2cirA 297 1.43e-24 1jovA 270 6.33e-23 b.30.5.7 84192 3bs6A 280 0.1374 2cqsA 842 0.1712 3blcA 330 0.2051 1qhtA 775 0.6033 c.55.3.5,e.8.1.1 33722,43011 1vclA 432 0.7535 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1yewA 382 1.485 1lf6A 684 1.779 a.102.1.5,b.30.5.5 77918,77919 1uypA 432 2.262 b.29.1.19,b.67.2.3 100176,100177 1a8d 452 2.855 2ihoA 293 4.449 2bgiA 272 4.699 1nkgA 508 4.722 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1zdsA 336 6.403 b.6.1.3,b.6.1.3 124952,124953 1w2tA 432 6.602 b.29.1.19,b.67.2.3 120607,120608 1v04A 355 7.216 b.68.6.2 100240 1h54A 754 7.437 a.102.1.4,b.30.5.3 60634,60635 1kcwA 1046 7.904 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1v7wA 807 8.759 a.102.1.4,b.30.5.3 108411,108412 1jmxB 349 10.41 b.69.2.2 66906 1oe1A 336 11.28 b.6.1.3,b.6.1.3 86891,86892 1kbvA 327 11.37 b.6.1.3,b.6.1.3 68395,68396 1h6lA 353 12.51 b.68.3.1 60687 2rc5A 314 13.51 1nbcA 155 14.23 b.2.2.2 22390 1txkA 498 15.52 b.1.18.2,b.30.5.9 107425,107426 1mpxA 615 15.96 b.18.1.13,c.69.1.21 85041,85042 2rdyA 803 16.68 1qxmA 300 16.99 b.42.2.1,b.42.2.1 96533,96534 3cjxA 165 17.38 1q8iA 783 17.39 c.55.3.5,e.8.1.1 96208,96209 1h8pA 109 17.41 g.14.1.2,g.14.1.2 70916,70917 2qc1B 212 17.44 2aprA 325 18.22 b.50.1.2 26819 2gudA 122 18.33 b.77.3.1 135732 2r5kA 424 20.31 2q3zA 687 21.44 2hlzA 312 21.72 1a8pA 258 21.76 b.43.4.2,c.25.1.1 25654,31544 1e42A 258 22.01 b.1.10.1,d.105.1.1 22316,40792 2axcA 264 23.05 1sefA 274 23.33 b.82.1.11 105452 1knmA 130 24.00 b.42.2.1 72781 2f91A 237 24.28 b.47.1.2 133150 2ix0A 663 24.65 1fndA 314 25.25 b.43.4.2,c.25.1.1 25626,31516 1y43B 173 25.60 1am2A 199 25.90 b.86.1.2 28381 1lo6A 223 26.17 b.47.1.2 74143 2geeA 203 26.19 2i2cA 272 26.32 2jd4A 383 26.64 1iz5A 249 27.24 d.131.1.2,d.131.1.2 83834,83835 2eigA 234 30.04 1vj2A 126 30.17 b.82.1.10 100796 1eerB 227 31.02 b.1.2.1,b.1.2.1 22011,22012 1f60A 458 32.56 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2oqeA 660 32.94 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 3bgaA 1010 33.45 2ivwA 113 33.89 3ceyA 474 35.66 2r9pA 224 36.59 1dzlA 505 37.61 b.121.6.1 23586 1ogiA 303 39.23 b.43.4.2,c.25.1.1 92914,92915 2p4mA 219 40.26 2id0A 644 41.78 2h0vA 338 42.50 1cruA 454 42.69 b.68.2.1 27617 1exg 110 42.83 1yhfA 115 43.69 b.82.1.9 123176 1uq5A 263 43.71 d.165.1.1 99778 2d1zA 436 44.49 1lr5A 163 44.73 b.82.1.2 74215 2pd0A 223 45.31 2pkfA 334 45.62 1tl2A 236 46.15 b.67.1.1 27541 1cfbA 205 47.31 b.1.2.1,b.1.2.1 21991,21992 1t5hX 504 47.71 e.23.1.1 106449 2r6uA 148 49.07 1cfb 205 49.51 1xhbA 472 49.85 b.42.2.1,c.68.1.17 115290,115291 2qt6A 498 50.10 2q7dA 346 50.66 2asuB 234 50.88 1w6sA 599 52.04 b.70.1.1 114284 1zy9A 564 52.24 b.30.5.11,c.1.8.13 125813,125814 1mppA 361 52.79 b.50.1.2 26856 2rk9A 145 53.33 2f69A 261 53.70 b.76.2.1,b.85.7.1 133035,133036 2ahoA 414 53.83 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1xruA 282 54.13 b.82.1.13 122262 1qx4A 274 54.15 b.43.4.2,c.25.1.1 104624,104625 1ep3B 262 56.20 b.43.4.2,c.25.1.3 25664,31554 1avaC 181 57.21 b.42.4.1 25604 1eylA 186 59.23 b.42.4.1 25593 1rc6A 261 59.40 b.82.1.11 97287 1iauA 227 59.47 b.47.1.2 62124 1so9A 164 60.17 b.146.1.1 105842 1bquA 215 61.08 b.1.2.1,b.1.2.1 22066,22067 1n9eA 787 62.23 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1o7dD 282 63.80 2aiqA 231 65.36 1x0cA 549 65.57 2qjvA 270 65.86 2b1xA 470 67.56 b.33.1.2,d.129.3.3 127675,127676 3brgC 427 67.67 1pjxA 314 68.54 b.68.6.1 104167 1nhsA 447 69.04 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1dykA 394 71.02 b.29.1.4,b.29.1.4 24223,24224 1ybiA 288 71.36 1xksA 450 72.43 b.69.14.1 115422 2b5iC 199 72.84 b.1.2.1,b.1.2.1 127898,127899 2hrgA 496 72.94 1ouwA 152 73.10 b.77.3.1 93571 2f02A 323 73.54 c.72.1.1 132649 1yq2A 1024 73.77 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1ywkA 289 74.03 b.82.1.13 124155 4ubpB 126 74.46 b.85.3.1 28345 1zjkA 403 74.72 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1ksiA 642 75.52 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1n9pA 207 76.12 b.1.18.16 80343 1fna 93 76.80 2bklA 695 76.96 2ffuA 501 77.14 2qdxA 257 77.20 1wycA 392 78.18 2fuqA 747 78.19 1hs6A 611 78.33 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1h4wA 224 79.02 b.47.1.2 65622 2bibA 547 79.35 b.109.1.1,d.157.1.8 128581,128582 3c5mA 396 80.48 1oacA 727 81.44 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3choA 610 81.78 1qfhA 212 81.82 b.1.18.10,b.1.18.10 21893,21894 1v1aA 309 81.89 c.72.1.1 100249 1eejA 216 82.22 c.47.1.9,d.17.3.1 33057,38071 1ao5A 237 82.42 b.47.1.2 26334 2z5aB 420 82.58 2z8gA 549 82.62 3cfuA 159 83.79 2rfiA 285 84.97 2hbtA 247 85.17 1pbyB 337 85.44 b.69.2.2 94422 2vnuD 760 86.35 1t6eX 381 87.52 b.50.1.2 106564 1id2A 106 88.03 b.6.1.1 62288 3buuA 229 89.14 2z2nA 299 89.28 2jixB 225 89.71