# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.23e-33 b.30.5.4 98930 1lurA 339 7.00e-33 b.30.5.4 84717 1nszA 347 1.03e-32 b.30.5.4 80724 1ygaA 342 7.09e-32 1z45A 699 2.36e-30 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 6.65e-29 2cirA 297 1.68e-27 1jovA 270 6.02e-25 b.30.5.7 84192 3bs6A 280 0.03357 3blcA 330 0.06382 2cqsA 842 0.1269 1yewA 382 0.6888 1lf6A 684 1.402 a.102.1.5,b.30.5.5 77918,77919 1qhtA 775 1.601 c.55.3.5,e.8.1.1 33722,43011 1v7wA 807 3.100 a.102.1.4,b.30.5.3 108411,108412 2gudA 122 6.267 b.77.3.1 135732 2b1xA 470 7.119 b.33.1.2,d.129.3.3 127675,127676 1vclA 432 10.94 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1nbcA 155 14.10 b.2.2.2 22390 1uliA 460 14.58 b.33.1.2,d.129.3.3 107921,107922 1nkgA 508 16.90 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1cfbA 205 17.94 b.1.2.1,b.1.2.1 21991,21992 1h54A 754 20.13 a.102.1.4,b.30.5.3 60634,60635 2q7dA 346 20.19 1q8iA 783 20.38 c.55.3.5,e.8.1.1 96208,96209 2ix0A 663 20.70 1ytqA 204 23.04 b.11.1.1,b.11.1.1 124012,124013 2f69A 261 23.39 b.76.2.1,b.85.7.1 133035,133036 2b5iC 199 23.65 b.1.2.1,b.1.2.1 127898,127899 1f60A 458 23.87 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 3ch3X 265 25.02 1u9yA 284 26.01 c.61.1.2,c.61.1.2 119655,119656 1a8d 452 27.02 2rdyA 803 27.99 1uypA 432 28.85 b.29.1.19,b.67.2.3 100176,100177 2eknA 159 29.15 2r6hA 290 29.71 1v04A 355 30.39 b.68.6.2 100240 2axcA 264 30.51 2aprA 325 30.81 b.50.1.2 26819 1okiA 210 30.89 b.11.1.1,b.11.1.1 93255,93256 2qc1B 212 31.84 1zy9A 564 35.39 b.30.5.11,c.1.8.13 125813,125814 1rqwA 207 36.03 b.25.1.1 97781 2rk9A 145 37.34 3silA 379 38.47 b.68.1.1 27542 1a8pA 258 39.52 b.43.4.2,c.25.1.1 25654,31544 2p4mA 219 40.97 1ogiA 303 41.84 b.43.4.2,c.25.1.1 92914,92915 2ivwA 113 42.88 3bpoC 314 43.46 2f02A 323 45.64 c.72.1.1 132649 1fndA 314 46.13 b.43.4.2,c.25.1.1 25626,31516 2r6uA 148 46.83 1txkA 498 49.41 b.1.18.2,b.30.5.9 107425,107426 2rc5A 314 50.60 1wycA 392 51.48 1am2A 199 53.01 b.86.1.2 28381 2pkfA 334 53.03 1vm9A 111 53.04 b.33.1.1 108886 1oe1A 336 53.22 b.6.1.3,b.6.1.3 86891,86892 1xhbA 472 54.67 b.42.2.1,c.68.1.17 115290,115291 1vj2A 126 57.07 b.82.1.10 100796 1u6lA 149 57.60 d.32.1.7 113067 1o7nA 449 58.71 b.33.1.2,d.129.3.3 81162,81163 1zjkA 403 59.55 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1ouwA 152 61.60 b.77.3.1 93571 1v33A 366 62.17 d.264.1.1 100278 2hbtA 247 62.27 1h8pA 109 63.01 g.14.1.2,g.14.1.2 70916,70917 2hlzA 312 63.29 1e42A 258 64.11 b.1.10.1,d.105.1.1 22316,40792 1tyvA 554 64.63 b.80.1.6 28038 2geeA 203 64.64 1xksA 450 65.07 b.69.14.1 115422 2oqeA 660 65.40 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jmxB 349 65.45 b.69.2.2 66906 2q3wA 111 65.91 b.33.1.1 139813 1h6lA 353 66.02 b.68.3.1 60687 2eigA 234 67.77 2z5aB 420 67.99 2a46A 238 68.22 1hxnA 219 68.95 b.66.1.1 27529 2j7qA 232 68.97 1eylA 186 69.85 b.42.4.1 25593 2ihoA 293 69.86 1eerB 227 70.34 b.1.2.1,b.1.2.1 22011,22012 2bmoA 447 73.84 b.33.1.2,d.129.3.3 128804,128805 2gysA 419 75.27 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2fwvA 226 75.33 2r58A 265 75.74 2dddA 225 76.49 1tl2A 236 77.10 b.67.1.1 27541 1avaC 181 78.34 b.42.4.1 25604 3cwvA 369 79.32 1xf1A 926 79.64 2rfiA 285 79.90 1f6fB 210 80.94 b.1.2.1,b.1.2.1 22033,22034 2j66A 428 81.65 2f1nA 262 82.64 d.151.1.1 132782 2iihA 157 82.75 2r5kA 424 83.12 2pd0A 223 83.38 1rc6A 261 84.03 b.82.1.11 97287 2bklA 695 84.49 1h30A 422 85.38 b.29.1.4,b.29.1.4 76604,76605 1p4tA 155 87.40 f.4.1.1 87779 1jayA 212 88.63 c.2.1.6 66478 1pjxA 314 89.28 b.68.6.1 104167 2c27A 315 89.41 d.108.1.1 129659