# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 7.01e-33 b.30.5.4 98930 1nszA 347 5.20e-32 b.30.5.4 80724 1lurA 339 5.64e-32 b.30.5.4 84717 1ygaA 342 4.37e-31 1z45A 699 1.47e-29 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 5.29e-28 2cirA 297 4.33e-27 1jovA 270 1.91e-24 b.30.5.7 84192 3bs6A 280 0.07920 3blcA 330 0.1221 2cqsA 842 0.1386 1yewA 382 0.9384 1lf6A 684 1.799 a.102.1.5,b.30.5.5 77918,77919 1qhtA 775 3.658 c.55.3.5,e.8.1.1 33722,43011 2gudA 122 4.189 b.77.3.1 135732 1v7wA 807 5.720 a.102.1.4,b.30.5.3 108411,108412 2b1xA 470 6.888 b.33.1.2,d.129.3.3 127675,127676 1nbcA 155 11.38 b.2.2.2 22390 2f69A 261 14.64 b.76.2.1,b.85.7.1 133035,133036 3ch3X 265 15.28 1h54A 754 16.44 a.102.1.4,b.30.5.3 60634,60635 1cfbA 205 17.22 b.1.2.1,b.1.2.1 21991,21992 2ix0A 663 17.42 1uliA 460 17.45 b.33.1.2,d.129.3.3 107921,107922 1f60A 458 17.90 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1a8d 452 18.42 2r6hA 290 19.18 2eknA 159 20.40 2q7dA 346 21.14 1rqwA 207 21.47 b.25.1.1 97781 1ogiA 303 22.37 b.43.4.2,c.25.1.1 92914,92915 1ogoX 574 25.17 b.133.1.1,b.80.1.10 92925,92926 1ytqA 204 25.26 b.11.1.1,b.11.1.1 124012,124013 1fndA 314 25.77 b.43.4.2,c.25.1.1 25626,31516 2rc5A 314 27.03 1okiA 210 28.14 b.11.1.1,b.11.1.1 93255,93256 2rdyA 803 28.65 1nkgA 508 28.81 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1xhbA 472 28.83 b.42.2.1,c.68.1.17 115290,115291 1a8pA 258 33.38 b.43.4.2,c.25.1.1 25654,31544 1q8iA 783 36.55 c.55.3.5,e.8.1.1 96208,96209 2h0vA 338 36.99 2oqeA 660 37.60 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2gysA 419 38.22 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1tyvA 554 41.23 b.80.1.6 28038 2b5iC 199 41.77 b.1.2.1,b.1.2.1 127898,127899 1oe1A 336 41.93 b.6.1.3,b.6.1.3 86891,86892 3bpoC 314 41.98 2p4mA 219 42.74 1kcwA 1046 42.80 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1vj2A 126 42.92 b.82.1.10 100796 2axcA 264 43.14 2pd0A 223 44.66 2f02A 323 46.64 c.72.1.1 132649 2bgiA 272 49.93 1vclA 432 50.14 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2aprA 325 55.84 b.50.1.2 26819 1lr5A 163 56.49 b.82.1.2 74215 2ivwA 113 56.95 2qc1B 212 57.97 2hbtA 247 58.08 2z5aB 420 58.83 1ouwA 152 60.58 b.77.3.1 93571 1zdsA 336 61.61 b.6.1.3,b.6.1.3 124952,124953 2r5kA 424 62.18 2r6uA 148 62.72 1lp9E 194 64.35 b.1.1.1,b.1.1.2 91086,91087 2id0A 644 68.17 1wycA 392 70.00 2rk9A 145 70.83 3bgaA 1010 70.93 1am2A 199 71.80 b.86.1.2 28381 1zjkA 403 72.15 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2cnqA 306 72.28 d.143.1.1 130646 3cjxA 165 73.46 1jayA 212 74.86 c.2.1.6 66478 3ceyA 474 77.18 2dddA 225 77.40 1rc6A 261 77.43 b.82.1.11 97287 2hlzA 312 77.48 2geeA 203 78.11 2a46A 238 78.25 1cg2A 393 79.77 c.56.5.4,d.58.19.1 33844,39360 2q3wA 111 80.36 b.33.1.1 139813 2r9pA 224 81.84 1ywkA 289 81.88 b.82.1.13 124155 1u6lA 149 82.46 d.32.1.7 113067 1kbvA 327 82.80 b.6.1.3,b.6.1.3 68395,68396 2f1nA 262 82.81 d.151.1.1 132782 1f6fB 210 83.17 b.1.2.1,b.1.2.1 22033,22034 1nwzA 125 83.37 d.110.3.1 86370 2r58A 265 83.89 1a8dA 452 86.73 b.29.1.6,b.42.4.2 24262,25607 2ahoA 414 87.40 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1vm9A 111 87.44 b.33.1.1 108886 1xxpA 306 88.18 c.45.1.2 122423 1hs6A 611 89.95 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235