# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1snzA	344	2.11e-33	b.30.5.4	98930
1lurA	339	1.28e-32	b.30.5.4	84717
1nszA	347	1.55e-32	b.30.5.4	80724
1ygaA	342	1.44e-31		
1z45A	699	4.05e-30	b.30.5.4,c.2.1.2	124427,124428
2htaA	309	1.32e-28		
2cirA	297	1.36e-27		
1jovA	270	7.54e-25	b.30.5.7	84192
3bs6A	280	0.08696		
3blcA	330	0.1272		
2cqsA	842	0.1548		
1yewA	382	1.256		
1lf6A	684	1.282	a.102.1.5,b.30.5.5	77918,77919
1qhtA	775	3.005	c.55.3.5,e.8.1.1	33722,43011
2gudA	122	3.346	b.77.3.1	135732
2b1xA	470	6.127	b.33.1.2,d.129.3.3	127675,127676
1v7wA	807	6.912	a.102.1.4,b.30.5.3	108411,108412
2f69A	261	11.68	b.76.2.1,b.85.7.1	133035,133036
1nbcA	155	13.11	b.2.2.2	22390
1cfbA	205	14.21	b.1.2.1,b.1.2.1	21991,21992
3ch3X	265	14.58		
2r6hA	290	15.38		
2ix0A	663	15.62		
1uliA	460	16.55	b.33.1.2,d.129.3.3	107921,107922
1a8d	452	17.61		
1f60A	458	17.78	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1rqwA	207	18.37	b.25.1.1	97781
2eknA	159	19.80		
1ogoX	574	20.13	b.133.1.1,b.80.1.10	92925,92926
2rdyA	803	20.64		
1ogiA	303	20.95	b.43.4.2,c.25.1.1	92914,92915
1fndA	314	23.72	b.43.4.2,c.25.1.1	25626,31516
2q7dA	346	23.99		
1ytqA	204	24.85	b.11.1.1,b.11.1.1	124012,124013
2rc5A	314	25.51		
1xhbA	472	25.80	b.42.2.1,c.68.1.17	115290,115291
1h54A	754	27.60	a.102.1.4,b.30.5.3	60634,60635
1a8pA	258	30.33	b.43.4.2,c.25.1.1	25654,31544
1okiA	210	30.53	b.11.1.1,b.11.1.1	93255,93256
2b5iC	199	30.70	b.1.2.1,b.1.2.1	127898,127899
1nkgA	508	34.25	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
2gysA	419	35.99	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1vclA	432	36.90	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1cg2A	393	37.20	c.56.5.4,d.58.19.1	33844,39360
2r5kA	424	40.54		
1u9yA	284	40.77	c.61.1.2,c.61.1.2	119655,119656
3bpoC	314	41.07		
1v33A	366	41.30	d.264.1.1	100278
2axcA	264	41.43		
1tyvA	554	42.40	b.80.1.6	28038
1oe1A	336	42.82	b.6.1.3,b.6.1.3	86891,86892
2h0vA	338	45.69		
1q8iA	783	47.12	c.55.3.5,e.8.1.1	96208,96209
2qc1B	212	48.49		
2f02A	323	49.21	c.72.1.1	132649
2pd0A	223	50.90		
1vj2A	126	52.65	b.82.1.10	100796
2oqeA	660	53.99	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
2bgiA	272	56.45		
1lp9E	194	56.82	b.1.1.1,b.1.1.2	91086,91087
1ouwA	152	60.36	b.77.3.1	93571
2hlzA	312	60.68		
2id0A	644	61.04		
1kcwA	1046	62.68	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	23151,23152,23153,23154,23155,23156
2geeA	203	63.42		
1u3wA	374	65.47	b.35.1.2,c.2.1.1	113013,113014
2f1nA	262	65.57	d.151.1.1	132782
1jayA	212	66.21	c.2.1.6	66478
1f6fB	210	66.88	b.1.2.1,b.1.2.1	22033,22034
1zjkA	403	66.98	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2p4mA	219	67.31		
1wycA	392	67.62		
3cjxA	165	71.29		
2pkfA	334	72.09		
2rfiA	285	72.45		
2rk9A	145	72.58		
2z5aB	420	72.70		
1tyv	542	72.92		
1lr5A	163	74.03	b.82.1.2	74215
1n8kA	374	74.70	b.35.1.2,c.2.1.1	80298,80299
2q3wA	111	75.35	b.33.1.1	139813
2hbtA	247	75.99		
1vm9A	111	76.24	b.33.1.1	108886
2iihA	157	78.69		
1oz2A	331	78.96	b.34.9.3,b.34.9.3,b.34.9.3	93781,93782,93783
2c27A	315	79.30	d.108.1.1	129659
1avaC	181	80.84	b.42.4.1	25604
1p0fA	373	83.93	b.35.1.2,c.2.1.1	87642,87643
1u6lA	149	84.45	d.32.1.7	113067
2r58A	265	85.04		
2r9pA	224	88.12		
2ivwA	113	88.28