# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.69e-38 b.30.5.4 98930 1lurA 339 2.13e-38 b.30.5.4 84717 1nszA 347 3.64e-38 b.30.5.4 80724 1ygaA 342 1.42e-36 1z45A 699 2.17e-35 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 7.20e-34 2cirA 297 1.82e-30 1jovA 270 7.99e-29 b.30.5.7 84192 3bs6A 280 0.000216 3blcA 330 0.002392 2cqsA 842 0.1803 1yewA 382 0.4790 1v7wA 807 0.6229 a.102.1.4,b.30.5.3 108411,108412 3bgaA 1010 0.7014 1nbcA 155 1.756 b.2.2.2 22390 1ytqA 204 7.534 b.11.1.1,b.11.1.1 124012,124013 1rc6A 261 9.139 b.82.1.11 97287 1jz8A 1023 9.396 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2z5aB 420 9.734 2ivwA 113 10.45 1kcwA 1046 10.55 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1u9yA 284 10.68 c.61.1.2,c.61.1.2 119655,119656 2yx1A 336 14.02 2ix0A 663 14.50 1exg 110 17.12 1lf6A 684 19.36 a.102.1.5,b.30.5.5 77918,77919 1ev5A 264 19.50 d.117.1.1 40935 2q3zA 687 21.28 1ex0A 731 21.52 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1zdsA 336 21.77 b.6.1.3,b.6.1.3 124952,124953 2g8mA 264 25.72 1d02A 202 29.88 c.52.1.8 33313 2g64A 140 29.98 d.96.1.2 134694 1okiA 210 29.98 b.11.1.1,b.11.1.1 93255,93256 1ten 90 31.25 1qqqA 264 34.41 d.117.1.1 40931 2eigA 234 36.37 1xxpA 306 36.52 c.45.1.2 122423 2v3gA 283 36.82 2b5iC 199 37.21 b.1.2.1,b.1.2.1 127898,127899 1qhtA 775 37.48 c.55.3.5,e.8.1.1 33722,43011 1u3wA 374 37.93 b.35.1.2,c.2.1.1 113013,113014 1i31A 314 39.02 b.2.7.1 22481 2g8oA 264 39.47 d.117.1.1 134779 2rc5A 314 39.56 1p0fA 373 40.28 b.35.1.2,c.2.1.1 87642,87643 2axcA 264 42.79 1nkgA 508 42.98 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2bivA 243 44.89 b.34.9.3,b.34.9.3 128592,128593 1n8kA 374 46.14 b.35.1.2,c.2.1.1 80298,80299 1d2sA 170 46.78 b.29.1.4 24221 1ywkA 289 47.17 b.82.1.13 124155 2o3oA 254 49.13 2ixsA 323 49.75 1pz7A 204 51.11 b.29.1.4 95405 2pd0A 223 51.51 1cfbA 205 51.85 b.1.2.1,b.1.2.1 21991,21992 3c9gA 142 53.85 1fna 93 54.82 1tenA 90 55.18 b.1.2.1 21990 1ym5A 300 59.28 1fndA 314 60.00 b.43.4.2,c.25.1.1 25626,31516 1lp9E 194 60.19 b.1.1.1,b.1.1.2 91086,91087 2rb8A 104 61.57 1obdA 306 65.09 d.143.1.1 86767 2hbtA 247 65.77 1jayA 212 65.81 c.2.1.6 66478 1xruA 282 66.35 b.82.1.13 122262 1mpxA 615 66.68 b.18.1.13,c.69.1.21 85041,85042 2hftA 218 67.37 b.1.2.1,b.1.2.1 21951,21952 1qnrA 344 68.53 c.1.8.3 28834 1f8rA 498 68.97 c.3.1.2,d.16.1.5 30410,37974 1u0fA 564 69.96 c.80.1.2 112912 1bkpA 278 70.53 d.117.1.1 41029 1iarB 207 72.43 b.1.2.1,b.1.2.1 22037,22038 2jhfA 374 72.78 b.35.1.2,c.2.1.1 138314,138315 1ajkA 214 78.02 b.29.1.2 24176 2r6hA 290 80.10 1o7dD 282 82.79 2ggcA 263 83.18 d.127.1.1 135127 2osoA 163 84.27 1sefA 274 89.87 b.82.1.11 105452