# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 4.18e-33 b.30.5.4 98930 1lurA 339 4.22e-32 b.30.5.4 84717 1nszA 347 1.04e-31 b.30.5.4 80724 1ygaA 342 1.01e-30 1z45A 699 2.51e-29 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 5.40e-28 2cirA 297 7.14e-27 1jovA 270 2.51e-24 b.30.5.7 84192 3bs6A 280 0.08207 3blcA 330 0.09537 2cqsA 842 0.2210 1v7wA 807 1.307 a.102.1.4,b.30.5.3 108411,108412 1lf6A 684 1.595 a.102.1.5,b.30.5.5 77918,77919 1qhtA 775 1.789 c.55.3.5,e.8.1.1 33722,43011 1q8iA 783 6.505 c.55.3.5,e.8.1.1 96208,96209 2b1xA 470 6.618 b.33.1.2,d.129.3.3 127675,127676 1yewA 382 7.307 2rdyA 803 7.586 2gudA 122 7.812 b.77.3.1 135732 1h54A 754 7.914 a.102.1.4,b.30.5.3 60634,60635 1a8d 452 11.13 1cfbA 205 12.14 b.1.2.1,b.1.2.1 21991,21992 1nbcA 155 13.29 b.2.2.2 22390 3bgaA 1010 14.46 1f60A 458 19.81 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1h6lA 353 19.88 b.68.3.1 60687 2axcA 264 20.40 2r6hA 290 20.74 1a8pA 258 21.01 b.43.4.2,c.25.1.1 25654,31544 1nkgA 508 21.25 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2ihoA 293 21.40 1jmxB 349 21.94 b.69.2.2 66906 1ytqA 204 22.25 b.11.1.1,b.11.1.1 124012,124013 1e42A 258 22.73 b.1.10.1,d.105.1.1 22316,40792 2ix0A 663 23.44 1uypA 432 23.49 b.29.1.19,b.67.2.3 100176,100177 1okiA 210 26.39 b.11.1.1,b.11.1.1 93255,93256 2ivwA 113 26.65 2b5iC 199 27.65 b.1.2.1,b.1.2.1 127898,127899 1v04A 355 27.72 b.68.6.2 100240 1uliA 460 27.89 b.33.1.2,d.129.3.3 107921,107922 1zjkA 403 28.48 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1vclA 432 29.41 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3ch3X 265 30.31 2pkfA 334 31.06 2q7dA 346 32.30 2eknA 159 33.10 2geeA 203 33.31 2aprA 325 34.58 b.50.1.2 26819 2f69A 261 35.31 b.76.2.1,b.85.7.1 133035,133036 2bklA 695 35.83 2qc1B 212 36.42 2rk9A 145 37.09 2oqeA 660 37.69 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1fndA 314 37.95 b.43.4.2,c.25.1.1 25626,31516 1u9yA 284 38.66 c.61.1.2,c.61.1.2 119655,119656 2pd0A 223 40.31 2f02A 323 42.05 c.72.1.1 132649 3buuA 229 45.66 1qx4A 274 45.82 b.43.4.2,c.25.1.1 104624,104625 1rqwA 207 46.44 b.25.1.1 97781 2hlzA 312 47.09 1txkA 498 52.27 b.1.18.2,b.30.5.9 107425,107426 2cy5A 140 53.02 b.55.1.2 131018 1eylA 186 54.11 b.42.4.1 25593 1jykA 254 54.46 c.68.1.13 67458 2bgiA 272 54.88 1wycA 392 55.59 2p4mA 219 57.20 1ogiA 303 59.53 b.43.4.2,c.25.1.1 92914,92915 2hbtA 247 59.79 1y43B 173 59.82 1u6lA 149 61.74 d.32.1.7 113067 1ouwA 152 63.80 b.77.3.1 93571 2rc5A 314 65.24 1xhbA 472 68.42 b.42.2.1,c.68.1.17 115290,115291 1tl2A 236 69.53 b.67.1.1 27541 2h2wA 312 69.65 1vj2A 126 70.34 b.82.1.10 100796 1pjxA 314 71.11 b.68.6.1 104167 1f6fB 210 71.41 b.1.2.1,b.1.2.1 22033,22034 1h30A 422 71.88 b.29.1.4,b.29.1.4 76604,76605 1qg3A 195 73.64 b.1.2.1,b.1.2.1 21993,21994 1n9eA 787 73.65 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1hs6A 611 74.17 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1f1xA 322 75.07 d.32.1.3,d.32.1.3 83208,83209 3bpoC 314 78.41 2rfiA 285 78.47 2r6uA 148 78.54 1jayA 212 78.61 c.2.1.6 66478 1rc6A 261 79.08 b.82.1.11 97287 2ixsA 323 79.81 1am2A 199 82.32 b.86.1.2 28381 1lp9E 194 82.63 b.1.1.1,b.1.1.2 91086,91087 2eigA 234 82.86 2aqmA 154 83.95 1jz8A 1023 83.95 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1yhfA 115 85.64 b.82.1.9 123176 1avaC 181 88.29 b.42.4.1 25604 1zy9A 564 88.32 b.30.5.11,c.1.8.13 125813,125814 1uq5A 263 88.99 d.165.1.1 99778 1cfb 205 89.66