# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 5.16e-27 b.30.5.4 98930 1lurA 339 3.03e-25 b.30.5.4 84717 1nszA 347 3.36e-25 b.30.5.4 80724 1ygaA 342 9.15e-25 2htaA 309 1.39e-22 2cirA 297 4.44e-22 1z45A 699 9.69e-22 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 2.07e-19 b.30.5.7 84192 3bs6A 280 0.09832 3blcA 330 0.2597 2cqsA 842 0.3571 1a8d 452 1.703 1v7wA 807 1.850 a.102.1.4,b.30.5.3 108411,108412 1lf6A 684 2.207 a.102.1.5,b.30.5.5 77918,77919 1yewA 382 3.220 1q8iA 783 3.415 c.55.3.5,e.8.1.1 96208,96209 1a9xB 379 3.714 c.8.3.1,c.23.16.1 30732,31409 1n0uA 842 3.723 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1zjkA 403 5.410 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1jvnA 555 8.893 c.1.2.1,c.23.16.1 67355,67356 2gudA 122 9.071 b.77.3.1 135732 1qhtA 775 9.672 c.55.3.5,e.8.1.1 33722,43011 1jmxB 349 9.929 b.69.2.2 66906 2rdyA 803 10.29 1rqwA 207 11.60 b.25.1.1 97781 2b1xA 470 11.87 b.33.1.2,d.129.3.3 127675,127676 1cfbA 205 12.34 b.1.2.1,b.1.2.1 21991,21992 1nhsA 447 13.90 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1h30A 422 14.20 b.29.1.4,b.29.1.4 76604,76605 2bgiA 272 14.38 2f2hA 773 15.45 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1g0dA 695 15.56 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1uliA 460 17.00 b.33.1.2,d.129.3.3 107921,107922 2oqeA 660 17.03 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1h54A 754 17.05 a.102.1.4,b.30.5.3 60634,60635 2vnuD 760 18.28 1gpeA 587 19.16 c.3.1.2,d.16.1.1 30387,37951 1zy9A 564 19.55 b.30.5.11,c.1.8.13 125813,125814 2ix0A 663 21.35 2hldD 478 21.84 1i19A 561 22.98 d.58.32.3,d.145.1.1 61522,61523 1nbcA 155 23.01 b.2.2.2 22390 2v3aA 384 23.05 1pn0A 665 23.47 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1f60A 458 24.30 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2z8gA 549 24.99 1kcwA 1046 25.33 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1yq2A 1024 25.90 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 3ch3X 265 25.91 3psgA 370 26.39 b.50.1.2 26841 1accA 735 29.46 f.11.1.1 43828 1vclA 432 32.32 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2e57A 637 32.68 2rc5A 314 33.95 2bryA 497 34.95 2id0A 644 35.29 1oz2A 331 36.11 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2geeA 203 36.99 2q7dA 346 38.96 1nkgA 508 39.54 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1vkhA 273 39.89 c.69.1.32 108662 2r6hA 290 40.27 2eknA 159 41.18 1p0fA 373 41.20 b.35.1.2,c.2.1.1 87642,87643 1vjjA 692 41.87 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1ogiA 303 42.30 b.43.4.2,c.25.1.1 92914,92915 1a8dA 452 42.57 b.29.1.6,b.42.4.2 24262,25607 2i6uA 307 43.33 1zx4A 192 44.24 1pl8A 356 45.50 b.35.1.2,c.2.1.1 94878,94879 1a8pA 258 46.42 b.43.4.2,c.25.1.1 25654,31544 1ytqA 204 46.84 b.11.1.1,b.11.1.1 124012,124013 1am2A 199 48.39 b.86.1.2 28381 2porA 301 48.69 f.4.3.1 43759 2vbaA 406 50.00 1okiA 210 50.56 b.11.1.1,b.11.1.1 93255,93256 2f69A 261 51.05 b.76.2.1,b.85.7.1 133035,133036 1wycA 392 51.98 2axcA 264 52.82 2p4mA 219 54.98 1jz8A 1023 57.98 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1gteA 1025 58.43 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ex0A 731 59.47 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2pd0A 223 59.85 2h5gA 463 60.64 2cduA 452 60.86 2r6uA 148 61.82 2q3zA 687 62.49 2b78A 385 62.55 b.122.1.9,c.66.1.51 128025,128026 2bnuA 203 62.89 2dddA 225 63.29 1avaC 181 63.70 b.42.4.1 25604 1lniA 96 64.17 d.1.1.2 74046 2vqiA 515 64.77 2pkfA 334 68.42 2jayA 291 69.52 1uqwA 509 73.28 c.94.1.1 99799 1mppA 361 74.77 b.50.1.2 26856 1fndA 314 74.89 b.43.4.2,c.25.1.1 25626,31516 1ouwA 152 75.59 b.77.3.1 93571 2bivA 243 75.90 b.34.9.3,b.34.9.3 128592,128593 2vhxA 377 76.55 2odtX 328 78.41 1f6fB 210 79.52 b.1.2.1,b.1.2.1 22033,22034 2vj8A 611 80.21 1cfb 205 80.59 3cmsA 323 80.92 b.50.1.2 26865 1nwzA 125 81.25 d.110.3.1 86370 2bekA 257 83.75 1i31A 314 86.62 b.2.7.1 22481 2pjoA 268 88.66 1m8uA 173 88.74 b.11.1.1,b.11.1.1 91233,91234 2a46A 238 89.29 1k0fA 277 89.40 c.92.2.2 71974 2rk9A 145 89.43