# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.44e-30 b.30.5.4 98930 1lurA 339 1.07e-29 b.30.5.4 84717 1nszA 347 2.12e-29 b.30.5.4 80724 1ygaA 342 2.23e-28 1z45A 699 5.15e-27 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 7.87e-26 2cirA 297 3.04e-25 1jovA 270 1.03e-22 b.30.5.7 84192 3bs6A 280 0.05846 3blcA 330 0.1441 2cqsA 842 0.3809 1lf6A 684 2.217 a.102.1.5,b.30.5.5 77918,77919 1qhtA 775 3.119 c.55.3.5,e.8.1.1 33722,43011 2gudA 122 4.525 b.77.3.1 135732 1v7wA 807 4.731 a.102.1.4,b.30.5.3 108411,108412 1q8iA 783 6.595 c.55.3.5,e.8.1.1 96208,96209 2bgiA 272 6.803 2b1xA 470 7.848 b.33.1.2,d.129.3.3 127675,127676 2oqeA 660 10.01 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1yewA 382 10.37 1h54A 754 11.03 a.102.1.4,b.30.5.3 60634,60635 1nbcA 155 12.03 b.2.2.2 22390 2ix0A 663 12.14 1cfbA 205 14.52 b.1.2.1,b.1.2.1 21991,21992 1f60A 458 15.51 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2rdyA 803 16.00 1a8d 452 16.67 3ch3X 265 18.26 1ytqA 204 19.16 b.11.1.1,b.11.1.1 124012,124013 1fndA 314 20.09 b.43.4.2,c.25.1.1 25626,31516 2r6hA 290 20.90 1nkgA 508 22.57 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2eknA 159 23.00 2geeA 203 24.15 2q7dA 346 25.26 2pd0A 223 25.78 1zjkA 403 26.10 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1uliA 460 26.45 b.33.1.2,d.129.3.3 107921,107922 2axcA 264 29.25 1ogiA 303 29.91 b.43.4.2,c.25.1.1 92914,92915 1okiA 210 30.94 b.11.1.1,b.11.1.1 93255,93256 1rqwA 207 32.27 b.25.1.1 97781 1a8pA 258 33.13 b.43.4.2,c.25.1.1 25654,31544 2rc5A 314 33.43 1qfjA 232 37.16 b.43.4.2,c.25.1.1 25655,31545 1xhbA 472 38.22 b.42.2.1,c.68.1.17 115290,115291 1vclA 432 38.99 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1kcwA 1046 41.25 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2f69A 261 42.83 b.76.2.1,b.85.7.1 133035,133036 2pkfA 334 45.67 2hlzA 312 45.83 1qg3A 195 46.55 b.1.2.1,b.1.2.1 21993,21994 1jmxB 349 47.91 b.69.2.2 66906 1v04A 355 50.82 b.68.6.2 100240 1f6fB 210 52.90 b.1.2.1,b.1.2.1 22033,22034 1h30A 422 52.96 b.29.1.4,b.29.1.4 76604,76605 2qc1B 212 54.00 2f02A 323 56.23 c.72.1.1 132649 1uypA 432 58.93 b.29.1.19,b.67.2.3 100176,100177 2b5iC 199 59.32 b.1.2.1,b.1.2.1 127898,127899 2id0A 644 59.94 2ihoA 293 60.38 3bgaA 1010 61.13 3bpoC 314 62.92 1am2A 199 62.99 b.86.1.2 28381 2r5kA 424 64.19 1n9eA 787 64.60 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1ogoX 574 65.79 b.133.1.1,b.80.1.10 92925,92926 1avaC 181 66.74 b.42.4.1 25604 1eylA 186 67.13 b.42.4.1 25593 1v33A 366 67.73 d.264.1.1 100278 1e42A 258 69.11 b.1.10.1,d.105.1.1 22316,40792 2fkbA 180 70.53 d.113.1.2 133650 2r58A 265 71.46 2ivwA 113 75.79 1zdsA 336 78.53 b.6.1.3,b.6.1.3 124952,124953 2rfiA 285 80.00 2gysA 419 80.60 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 3cjxA 165 82.35 2qdxA 257 83.29 1mrj 247 83.91 2ayhA 214 84.11 b.29.1.2 24172 1h6lA 353 84.13 b.68.3.1 60687 1fjrA 195 84.29 b.102.1.1 59855 1qx4A 274 85.03 b.43.4.2,c.25.1.1 104624,104625 1rc6A 261 85.14 b.82.1.11 97287 1vj2A 126 85.23 b.82.1.10 100796 1jayA 212 87.13 c.2.1.6 66478 2z5aB 420 87.70 1xvqA 175 89.11 c.47.1.10 116094 2cy5A 140 89.31 b.55.1.2 131018 1lo6A 223 89.73 b.47.1.2 74143 2rk9A 145 89.88