# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.13e-35 b.30.5.4 98930 1lurA 339 1.25e-34 b.30.5.4 84717 1nszA 347 1.39e-34 b.30.5.4 80724 1ygaA 342 1.73e-33 1z45A 699 1.05e-31 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 6.30e-30 2cirA 297 3.37e-29 1jovA 270 3.62e-26 b.30.5.7 84192 3bs6A 280 0.1778 3blcA 330 0.2672 2cqsA 842 0.2728 1lf6A 684 1.604 a.102.1.5,b.30.5.5 77918,77919 1yewA 382 1.605 1v7wA 807 5.057 a.102.1.4,b.30.5.3 108411,108412 2ix0A 663 5.828 2gudA 122 6.678 b.77.3.1 135732 2rdyA 803 7.858 1qhtA 775 7.947 c.55.3.5,e.8.1.1 33722,43011 2f69A 261 8.416 b.76.2.1,b.85.7.1 133035,133036 2b1xA 470 9.840 b.33.1.2,d.129.3.3 127675,127676 1nbcA 155 10.79 b.2.2.2 22390 2q7dA 346 13.70 1cfbA 205 14.49 b.1.2.1,b.1.2.1 21991,21992 1p0fA 373 15.92 b.35.1.2,c.2.1.1 87642,87643 1a8d 452 16.84 1v33A 366 16.97 d.264.1.1 100278 2id0A 644 18.55 1u3wA 374 18.88 b.35.1.2,c.2.1.1 113013,113014 1u9yA 284 21.19 c.61.1.2,c.61.1.2 119655,119656 3bpoC 314 21.37 1tyvA 554 22.31 b.80.1.6 28038 2f1nA 262 23.46 d.151.1.1 132782 1tyv 542 23.76 1q8iA 783 24.78 c.55.3.5,e.8.1.1 96208,96209 1zjkA 403 24.86 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2iihA 157 25.75 1n8kA 374 25.85 b.35.1.2,c.2.1.1 80298,80299 2pd0A 223 25.99 1rqwA 207 26.16 b.25.1.1 97781 1fndA 314 26.82 b.43.4.2,c.25.1.1 25626,31516 1okiA 210 28.53 b.11.1.1,b.11.1.1 93255,93256 3cjxA 165 34.37 2hlzA 312 39.39 2r6hA 290 39.42 2rc5A 314 40.11 1h54A 754 45.09 a.102.1.4,b.30.5.3 60634,60635 1uliA 460 45.66 b.33.1.2,d.129.3.3 107921,107922 1xxpA 306 45.70 c.45.1.2 122423 1ytqA 204 46.59 b.11.1.1,b.11.1.1 124012,124013 1ogiA 303 47.10 b.43.4.2,c.25.1.1 92914,92915 2qc1B 212 49.00 2c27A 315 49.87 d.108.1.1 129659 1v04A 355 49.88 b.68.6.2 100240 1cg2A 393 50.21 c.56.5.4,d.58.19.1 33844,39360 1oe1A 336 51.98 b.6.1.3,b.6.1.3 86891,86892 1ouwA 152 53.93 b.77.3.1 93571 1f6fB 210 54.47 b.1.2.1,b.1.2.1 22033,22034 2oqeA 660 54.66 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2axcA 264 55.98 2j66A 428 57.53 2eeyA 162 63.53 2igqA 285 63.57 1eerB 227 63.88 b.1.2.1,b.1.2.1 22011,22012 1xhbA 472 65.38 b.42.2.1,c.68.1.17 115290,115291 1kcwA 1046 66.57 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1avaC 181 67.50 b.42.4.1 25604 2jhfA 374 68.32 b.35.1.2,c.2.1.1 138314,138315 3ch3X 265 68.42 1nkgA 508 68.96 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1jayA 212 70.75 c.2.1.6 66478 2geeA 203 71.36 1mppA 361 73.60 b.50.1.2 26856 1zy9A 564 74.67 b.30.5.11,c.1.8.13 125813,125814 1a8pA 258 77.48 b.43.4.2,c.25.1.1 25654,31544 2b5iC 199 79.20 b.1.2.1,b.1.2.1 127898,127899 1f60A 458 79.45 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ywkA 289 84.11 b.82.1.13 124155 1vj2A 126 84.84 b.82.1.10 100796 2r58A 265 85.30 1h30A 422 86.33 b.29.1.4,b.29.1.4 76604,76605 2r5kA 424 87.43 1zx4A 192 88.20