# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 3.51e-35 b.30.5.4 98930 1lurA 339 2.27e-34 b.30.5.4 84717 1nszA 347 4.52e-34 b.30.5.4 80724 1ygaA 342 6.87e-33 1z45A 699 7.58e-32 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 6.32e-30 2cirA 297 3.75e-29 1jovA 270 5.35e-26 b.30.5.7 84192 3bs6A 280 0.1543 2cqsA 842 0.2990 3blcA 330 0.4647 1yewA 382 1.139 1qhtA 775 1.408 c.55.3.5,e.8.1.1 33722,43011 1lf6A 684 2.055 a.102.1.5,b.30.5.5 77918,77919 1v7wA 807 4.062 a.102.1.4,b.30.5.3 108411,108412 1a8d 452 8.814 1nbcA 155 10.25 b.2.2.2 22390 2ix0A 663 10.55 2gudA 122 10.75 b.77.3.1 135732 2rc5A 314 10.97 2rdyA 803 12.25 1vclA 432 16.13 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1q8iA 783 16.76 c.55.3.5,e.8.1.1 96208,96209 3cjxA 165 16.81 1fndA 314 18.43 b.43.4.2,c.25.1.1 25626,31516 1cfbA 205 20.92 b.1.2.1,b.1.2.1 21991,21992 1v33A 366 21.72 d.264.1.1 100278 2q7dA 346 22.57 2pd0A 223 23.55 1okiA 210 23.95 b.11.1.1,b.11.1.1 93255,93256 2bgiA 272 24.66 1ogiA 303 25.95 b.43.4.2,c.25.1.1 92914,92915 1rqwA 207 26.06 b.25.1.1 97781 1zdsA 336 26.43 b.6.1.3,b.6.1.3 124952,124953 2axcA 264 26.88 2b1xA 470 28.41 b.33.1.2,d.129.3.3 127675,127676 1oe1A 336 30.17 b.6.1.3,b.6.1.3 86891,86892 1kcwA 1046 34.25 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2hlzA 312 35.23 1h54A 754 37.11 a.102.1.4,b.30.5.3 60634,60635 1ytqA 204 37.16 b.11.1.1,b.11.1.1 124012,124013 1zjkA 403 37.58 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2f91A 237 39.17 b.47.1.2 133150 2oqeA 660 39.24 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1lo6A 223 41.61 b.47.1.2 74143 2r6hA 290 42.72 1jmxB 349 43.91 b.69.2.2 66906 1f60A 458 45.53 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2f1nA 262 45.54 d.151.1.1 132782 2f69A 261 46.52 b.76.2.1,b.85.7.1 133035,133036 2p4mA 219 46.59 1xhbA 472 46.60 b.42.2.1,c.68.1.17 115290,115291 2pkfA 334 49.49 2r9pA 224 52.33 2rfiA 285 52.99 2qc1B 212 54.49 2geeA 203 55.30 1mppA 361 56.32 b.50.1.2 26856 2z5aB 420 58.39 2eigA 234 59.32 1oewA 329 59.51 b.50.1.2 86924 2h0vA 338 60.75 2r5kA 424 61.79 1v04A 355 62.28 b.68.6.2 100240 1a8pA 258 63.85 b.43.4.2,c.25.1.1 25654,31544 1nkgA 508 65.08 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1n9eA 787 69.50 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2id0A 644 69.57 1vj2A 126 70.84 b.82.1.10 100796 2ivwA 113 71.87 2osoA 163 72.81 2dddA 225 73.73 2b5iC 199 74.49 b.1.2.1,b.1.2.1 127898,127899 2aprA 325 75.54 b.50.1.2 26819 2c27A 315 76.40 d.108.1.1 129659 2vnuD 760 77.98 2p9wA 334 78.86 1am2A 199 79.04 b.86.1.2 28381 1zx4A 192 81.31 3clqA 421 82.01 1exg 110 82.59 1u9yA 284 82.68 c.61.1.2,c.61.1.2 119655,119656 1eerB 227 83.25 b.1.2.1,b.1.2.1 22011,22012 1eylA 186 83.46 b.42.4.1 25593 1so9A 164 85.57 b.146.1.1 105842