# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 8.34e-35 b.30.5.4 98930 1lurA 339 6.67e-34 b.30.5.4 84717 1nszA 347 9.02e-34 b.30.5.4 80724 1ygaA 342 1.40e-32 1z45A 699 2.92e-31 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.34e-29 2cirA 297 2.12e-28 1jovA 270 1.32e-25 b.30.5.7 84192 3bs6A 280 0.1289 2cqsA 842 0.1675 3blcA 330 0.3054 1qhtA 775 1.283 c.55.3.5,e.8.1.1 33722,43011 1yewA 382 1.382 1lf6A 684 2.208 a.102.1.5,b.30.5.5 77918,77919 1v7wA 807 6.597 a.102.1.4,b.30.5.3 108411,108412 2gudA 122 6.724 b.77.3.1 135732 1nbcA 155 6.773 b.2.2.2 22390 2rc5A 314 6.802 1a8d 452 8.829 1kcwA 1046 9.316 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2pd0A 223 11.26 1okiA 210 12.70 b.11.1.1,b.11.1.1 93255,93256 1tyvA 554 13.30 b.80.1.6 28038 2rdyA 803 13.49 2b1xA 470 13.85 b.33.1.2,d.129.3.3 127675,127676 1vclA 432 14.76 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3cjxA 165 19.66 2q7dA 346 19.68 1cfbA 205 19.91 b.1.2.1,b.1.2.1 21991,21992 3bpoC 314 21.55 2ix0A 663 22.28 1h54A 754 22.42 a.102.1.4,b.30.5.3 60634,60635 1ytqA 204 22.46 b.11.1.1,b.11.1.1 124012,124013 2r6hA 290 22.91 1q8iA 783 23.77 c.55.3.5,e.8.1.1 96208,96209 2axcA 264 24.69 1v33A 366 28.23 d.264.1.1 100278 2id0A 644 28.37 1ywkA 289 28.80 b.82.1.13 124155 1rqwA 207 28.91 b.25.1.1 97781 1zdsA 336 30.41 b.6.1.3,b.6.1.3 124952,124953 2qc1B 212 31.09 2f69A 261 32.52 b.76.2.1,b.85.7.1 133035,133036 1fndA 314 32.89 b.43.4.2,c.25.1.1 25626,31516 1tyv 542 34.71 1eerB 227 35.31 b.1.2.1,b.1.2.1 22011,22012 1xhbA 472 35.60 b.42.2.1,c.68.1.17 115290,115291 1zjkA 403 36.40 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2hlzA 312 37.65 1oe1A 336 38.56 b.6.1.3,b.6.1.3 86891,86892 2geeA 203 39.20 2vnuD 760 43.67 2b5iC 199 44.40 b.1.2.1,b.1.2.1 127898,127899 1mfmA 153 44.50 b.1.8.1 22246 1vj2A 126 44.65 b.82.1.10 100796 2aprA 325 47.65 b.50.1.2 26819 1uliA 460 48.25 b.33.1.2,d.129.3.3 107921,107922 2c27A 315 49.07 d.108.1.1 129659 1txkA 498 49.12 b.1.18.2,b.30.5.9 107425,107426 2p4mA 219 49.47 1f60A 458 51.42 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2r5kA 424 54.49 2f02A 323 55.13 c.72.1.1 132649 1jmxB 349 55.17 b.69.2.2 66906 1kbvA 327 55.84 b.6.1.3,b.6.1.3 68395,68396 1u9yA 284 57.83 c.61.1.2,c.61.1.2 119655,119656 1exg 110 59.17 1jayA 212 59.78 c.2.1.6 66478 1ogiA 303 61.15 b.43.4.2,c.25.1.1 92914,92915 1lr5A 163 61.33 b.82.1.2 74215 1mppA 361 61.97 b.50.1.2 26856 1so9A 164 62.30 b.146.1.1 105842 1tl2A 236 62.45 b.67.1.1 27541 1nkgA 508 63.17 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1id2A 106 67.11 b.6.1.1 62288 1a8pA 258 67.47 b.43.4.2,c.25.1.1 25654,31544 2osoA 163 67.82 1cg2A 393 69.90 c.56.5.4,d.58.19.1 33844,39360 1uypA 432 70.94 b.29.1.19,b.67.2.3 100176,100177 2gysA 419 71.23 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2rk9A 145 71.31 1v04A 355 73.39 b.68.6.2 100240 3cwvA 369 74.43 2hbtA 247 74.93 1tfzA 424 75.84 d.32.1.3,d.32.1.3 106886,106887 1lp9E 194 75.98 b.1.1.1,b.1.1.2 91086,91087 1p0fA 373 76.14 b.35.1.2,c.2.1.1 87642,87643 1zx4A 192 77.49 2ihoA 293 78.22 2fkbA 180 78.60 d.113.1.2 133650 1oewA 329 78.96 b.50.1.2 86924 3clqA 421 78.99 1xxpA 306 81.64 c.45.1.2 122423 3ceyA 474 81.65 2h0vA 338 81.90 1lmiA 131 82.82 b.1.19.1 78098 2pkfA 334 83.17 2ivwA 113 88.23 1xruA 282 88.29 b.82.1.13 122262 2ahoA 414 88.36 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1f6fB 210 88.81 b.1.2.1,b.1.2.1 22033,22034 2z5aB 420 88.99