# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lurA 339 7.81e-38 b.30.5.4 84717 1snzA 344 1.39e-37 b.30.5.4 98930 1nszA 347 1.46e-37 b.30.5.4 80724 1ygaA 342 3.98e-36 1z45A 699 2.63e-33 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.08e-31 2cirA 297 1.17e-28 1jovA 270 2.27e-27 b.30.5.7 84192 3bs6A 280 0.01140 3blcA 330 0.01803 2z5aB 420 3.269 3bgaA 1010 6.862 1yewA 382 9.105 1h30A 422 13.43 b.29.1.4,b.29.1.4 76604,76605 1xxpA 306 14.31 c.45.1.2 122423 1qhtA 775 15.88 c.55.3.5,e.8.1.1 33722,43011 1o1yA 239 16.40 c.23.16.1 86554 1rc6A 261 17.77 b.82.1.11 97287 1d2sA 170 19.14 b.29.1.4 24221 1u9yA 284 20.01 c.61.1.2,c.61.1.2 119655,119656 1tfzA 424 20.87 d.32.1.3,d.32.1.3 106886,106887 1ywkA 289 23.53 b.82.1.13 124155 1hd7A 318 27.87 d.151.1.1 41780 2odlA 373 35.42 1lkdA 297 42.46 d.32.1.3,d.32.1.3 78059,78060 2i75A 320 45.08 2o3hA 285 45.37 1kw3B 292 45.65 d.32.1.3,d.32.1.3 77549,77550 2cm2A 304 47.31 c.45.1.2 130610 1ogiA 303 48.49 b.43.4.2,c.25.1.1 92914,92915 3cygA 222 48.60 1i31A 314 48.68 b.2.7.1 22481 1ev5A 264 51.37 d.117.1.1 40935 1mzyA 333 55.10 b.6.1.3,b.6.1.3 103848,103849 2eigA 234 55.12 1lniA 96 55.36 d.1.1.2 74046 1q8iA 783 55.81 c.55.3.5,e.8.1.1 96208,96209 1odzA 386 58.47 c.1.8.3 86889 1h7eA 245 59.43 c.68.1.13 60717 1g79A 218 61.34 b.45.1.1 25752 1mpxA 615 62.54 b.18.1.13,c.69.1.21 85041,85042 2g8oA 264 62.56 d.117.1.1 134779 1lmiA 131 63.58 b.1.19.1 78098 2g8mA 264 64.56 1cfbA 205 64.61 b.1.2.1,b.1.2.1 21991,21992 1ki0A 253 66.90 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 1fndA 314 69.52 b.43.4.2,c.25.1.1 25626,31516 1jvnA 555 73.41 c.1.2.1,c.23.16.1 67355,67356 1eziA 228 73.42 c.68.1.13 34512 1aq0A 306 73.93 c.1.8.3 28842 2a97A 439 74.14 1bobA 320 77.39 d.108.1.1 40816 1fecA 490 77.64 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1hqlA 257 89.66 b.29.1.1 65907