# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.69e-39 b.30.5.4 98930 1nszA 347 8.33e-39 b.30.5.4 80724 1lurA 339 9.64e-39 b.30.5.4 84717 1ygaA 342 1.46e-37 1z45A 699 2.90e-36 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.17e-33 2cirA 297 2.50e-30 1jovA 270 1.08e-27 b.30.5.7 84192 3bs6A 280 0.000479 3blcA 330 0.001066 2cqsA 842 0.2647 3bgaA 1010 0.5438 1v7wA 807 0.5908 a.102.1.4,b.30.5.3 108411,108412 1u9yA 284 0.9219 c.61.1.2,c.61.1.2 119655,119656 1yewA 382 2.345 1nbcA 155 4.363 b.2.2.2 22390 1avaC 181 4.867 b.42.4.1 25604 2z5aB 420 6.857 1arb 268 6.924 1lf6A 684 8.753 a.102.1.5,b.30.5.5 77918,77919 2ix0A 663 10.51 1rc6A 261 10.67 b.82.1.11 97287 1xxpA 306 11.19 c.45.1.2 122423 1xf1A 926 13.03 2olgA 278 13.94 1mpxA 615 15.05 b.18.1.13,c.69.1.21 85041,85042 1q25A 432 16.17 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1v7cA 351 20.71 c.79.1.1 100446 3cygA 222 22.06 2ivwA 113 23.17 1v0aA 178 23.64 b.18.1.30 119815 1h30A 422 23.83 b.29.1.4,b.29.1.4 76604,76605 1zy9A 564 25.45 b.30.5.11,c.1.8.13 125813,125814 1nkgA 508 25.88 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1oz2A 331 27.26 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2c61A 469 29.35 1ucdA 190 30.30 d.124.1.1 107767 2r6hA 290 31.97 2yr1A 257 33.93 2bvyA 475 34.83 b.1.18.2,c.1.8.3 129301,129302 1odzA 386 35.21 c.1.8.3 86889 1cfbA 205 38.63 b.1.2.1,b.1.2.1 21991,21992 1t8hA 277 38.66 d.194.1.2 106664 3ceyA 474 39.63 1rqwA 207 41.16 b.25.1.1 97781 1fwxA 595 41.29 b.6.1.4,b.69.3.1 60069,60070 1gqnA 252 42.09 c.1.10.1 90514 1uv0A 149 42.99 d.169.1.1 100028 1qhqA 140 43.50 b.6.1.1 63326 1v33A 366 46.07 d.264.1.1 100278 1l9xA 315 47.35 c.23.16.1 73762 1w6sA 599 47.85 b.70.1.1 114284 1h54A 754 47.92 a.102.1.4,b.30.5.3 60634,60635 1m1zA 513 49.64 c.26.2.1,d.153.1.1 78457,78458 2r58A 265 49.69 1l8nA 679 50.86 c.1.8.10,d.92.2.2 84564,84565 3bmzA 199 51.01 2pqmA 343 51.97 1eylA 186 52.22 b.42.4.1 25593 2qxlA 658 54.00 2go2A 163 54.12 2id0A 644 54.37 1jz8A 1023 55.64 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1itwA 741 56.87 c.77.1.2 76793 2hcrA 326 58.45 1bobA 320 60.31 d.108.1.1 40816 1r8nA 185 62.88 b.42.4.1 104851 2rftA 344 63.62 2h8zA 359 65.47 1vrmA 325 65.62 d.96.2.1 120472 1f8rA 498 66.14 c.3.1.2,d.16.1.5 30410,37974 1c3mA 147 67.09 b.77.3.1 27983 1rv9A 259 67.35 d.194.1.2 105105 1uuqA 440 67.97 c.1.8.3 100015 2egvA 229 68.21 2b61A 377 68.70 2q7dA 346 68.73 2qvcA 313 69.03 2osoA 163 70.06 2odlA 373 70.32 1a8pA 258 71.49 b.43.4.2,c.25.1.1 25654,31544 1okiA 210 71.96 b.11.1.1,b.11.1.1 93255,93256 1exg 110 72.40 1jmcA 246 74.59 b.40.4.3,b.40.4.3 25300,25301 1g43A 160 78.38 b.2.2.2 22392 1dkuA 317 84.11 c.61.1.2,c.61.1.2 34118,34119 2q3bA 313 84.63 1q8iA 783 84.68 c.55.3.5,e.8.1.1 96208,96209 1s1mA 545 85.21 c.23.16.1,c.37.1.10 105201,105202 1xfjA 261 86.49 d.194.1.2 109585