# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 2.79e-17 b.30.5.4 98930 1lurA 339 5.15e-17 b.30.5.4 84717 1nszA 347 1.41e-16 b.30.5.4 80724 1ygaA 342 4.05e-16 1z45A 699 2.40e-15 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 3.73e-13 2cirA 297 2.57e-12 1jovA 270 1.02e-10 b.30.5.7 84192 3bs6A 280 0.01139 3blcA 330 0.01690 3bgaA 1010 0.1348 2oqeA 660 0.5269 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jz8A 1023 0.9098 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1nkgA 508 1.158 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2cqsA 842 1.942 1h54A 754 2.511 a.102.1.4,b.30.5.3 60634,60635 2d73A 738 2.902 1o7dD 282 3.498 1yq2A 1024 4.444 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2hr0A 645 6.812 1iicA 422 11.55 d.108.1.2,d.108.1.2 62422,62423 1v7wA 807 13.12 a.102.1.4,b.30.5.3 108411,108412 3bc9A 599 14.69 1kcwA 1046 17.32 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1hd7A 318 17.53 d.151.1.1 41780 2dexX 671 17.93 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1cqqA 180 18.46 b.47.1.4 26422 1bquA 215 19.43 b.1.2.1,b.1.2.1 22066,22067 2a74A 643 21.05 2g23A 612 21.17 1jssA 224 21.35 d.129.3.2 71844 1gxrA 337 21.51 b.69.4.1 70722 2d1wA 638 22.04 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1n8fA 350 23.13 c.1.10.4 85397 1uh4A 637 24.32 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1gesA 450 25.82 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1pzsA 208 26.92 b.1.8.1 104397 2gu1A 361 27.31 2hxdA 204 27.77 2r6hA 290 27.78 2j58A 359 31.00 1rjoA 646 31.22 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1vheA 373 33.60 b.49.3.1,c.56.5.4 100669,100670 1itwA 741 34.06 c.77.1.2 76793 1zy9A 564 35.45 b.30.5.11,c.1.8.13 125813,125814 2b1xB 172 36.26 d.17.4.4 127677 1n9eA 787 37.56 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2piaA 321 39.14 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2b0tA 738 39.42 2ds3A 761 39.49 1w7cA 747 40.03 2glfA 450 41.15 1w6gA 646 42.87 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2id0A 644 43.25 1xs1A 193 44.23 b.85.4.1 115892 2o3hA 285 44.37 2j0pA 345 44.40 e.62.1.1 137903 2pia 321 45.01 1te5A 257 45.96 d.153.1.1 106795 2gfoA 396 47.94 d.3.1.9 135105 2r9zA 463 48.26 1of8A 370 48.89 c.1.10.4 92819 3bpoC 314 51.56 1pn0A 665 55.21 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ksiA 642 56.19 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2hpwA 233 57.69 2r9qA 370 57.73 2ipiA 521 58.59 1yloA 348 59.34 b.49.3.1,c.56.5.4 123659,123660 1el5A 389 60.76 c.3.1.2,d.16.1.3 30369,37937 1xksA 450 60.77 b.69.14.1 115422 1y56A 493 61.84 3cbjA 266 62.74 2dnjA 260 62.96 d.151.1.1 41790 2qedA 258 64.54 1xmzA 241 64.83 1nofA 383 65.72 b.71.1.2,c.1.8.3 92020,92021 1r5mA 425 65.81 1zdsA 336 66.27 b.6.1.3,b.6.1.3 124952,124953 1loxA 662 66.95 a.119.1.2,b.12.1.1 19238,23638 2imjA 166 67.01 3c6kA 381 67.17 2qe8A 343 67.68 1gy7A 125 68.67 d.17.4.2 70738 1ji1A 637 69.23 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1lmiA 131 69.37 b.1.19.1 78098 2p0mA 662 69.66 2q3zA 687 71.27 2vduB 450 73.42 1ssxA 198 75.30 b.47.1.1 98978 1b8aA 438 76.15 b.40.4.1,d.104.1.1 25244,40765 1xocA 520 76.18 c.94.1.1 122201 1oe1A 336 77.55 b.6.1.3,b.6.1.3 86891,86892 1z02A 446 78.70 1xezA 721 79.16 1zlqA 502 79.60 c.94.1.1 125253 1oacA 727 80.13 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ybiA 288 82.36 1bg2 325 83.15 1bli 483 83.15 1cfbA 205 83.27 b.1.2.1,b.1.2.1 21991,21992 2qsvA 220 85.17 2jn9A 105 85.18 2essA 248 86.05 d.38.1.8,d.38.1.8 132346,132347 1g6gA 127 86.33 b.26.1.2 23916 2ch4A 320 86.88 b.40.7.1,d.122.1.3 130447,130448 2ib8A 395 87.14 1lp3A 519 89.07 b.121.5.2 74169 2iumA 248 89.54 2a40B 260 89.56 d.151.1.1 126139