# List of top-scoring protein chains for T0449.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 4.60e-33 b.30.5.4 98930 1mmuA 347 2.44e-25 b.30.5.4 79303 1ns7A 347 3.54e-25 b.30.5.4 80707 1ns4A 347 3.88e-25 b.30.5.4 80703 1ns8A 347 4.17e-25 b.30.5.4 80709 1nssA 347 6.63e-25 b.30.5.4 80716 1lurA 339 9.19e-25 b.30.5.4 84717 1nsuA 347 1.50e-24 b.30.5.4 80718 1nszA 347 1.85e-24 b.30.5.4 80724 2cirA 297 9.06e-22 1z45A 699 1.78e-21 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.05e-19 1ygaA 342 1.35e-19 1jovA 270 2.87e-15 b.30.5.7 84192 1s9cA 298 6.339 d.38.1.4,d.38.1.4 118889,118890 1ndhA 272 11.11 b.43.4.2,c.25.1.1 25662,31552 1i7pA 274 13.64 b.43.4.2,c.25.1.1 66048,66049 2z8gA 549 18.03 1qx4A 274 21.56 b.43.4.2,c.25.1.1 104624,104625 1fobA 334 23.31 c.1.8.3 83255 2h1tA 188 29.88 1rl9A 357 29.95 a.83.1.1,d.128.1.2 104979,104980 1i14A 221 31.81 c.61.1.1 71100 1p52A 357 32.67 a.83.1.1,d.128.1.2 87792,87793 2ftnA 264 33.25 1i0iA 221 37.19 c.61.1.1 71094 2eixA 243 40.89 1i0lA 221 42.30 c.61.1.1 71096 1bg0A 356 42.35 a.83.1.1,d.128.1.2 18476,41211 1m15A 357 42.36 a.83.1.1,d.128.1.2 78368,78369 2odrB 648 42.44 2dawA 154 43.00 1md8A 329 44.08 b.47.1.2,g.18.1.1 91245,91246 1md7A 328 45.56 b.47.1.2,g.18.1.1 91243,91244 1tdqA 283 47.13 b.1.2.1,b.1.2.1,b.1.2.1 106782,106783,106784 1p50A 356 47.74 a.83.1.1,d.128.1.2 87786,87787 1sd0A 357 49.44 a.83.1.1,d.128.1.2 105424,105425 1i13A 221 49.65 c.61.1.1 71098 1p18A 221 50.60 c.61.1.1 104053 1tc1A 220 51.00 c.61.1.1 34083 1tc2A 221 51.09 c.61.1.1 34085 1c8uA 285 58.42 d.38.1.3,d.38.1.3 38547,38548 1aiqA 264 61.83 d.117.1.1 40967 2g8mA 264 63.81 1t6mA 299 63.96 1d4xA 375 67.76 c.55.1.1,c.55.1.1 59107,59108 1e6vC 258 69.55 d.58.31.1 39439 1ev5A 264 69.88 d.117.1.1 40935 1gafH 217 71.78 b.1.1.1,b.1.1.2 20083,21115 2or2A 296 72.75 2g8oA 264 72.97 d.117.1.1 134779 1axwA 265 73.15 d.117.1.1 40938 1h3pH 219 74.48 b.1.1.1,b.1.1.2 76648,76649 2vetA 264 76.03 1zprA 264 76.14 d.117.1.1 40978 1moeA 240 76.34 b.1.1.1,b.1.1.1 85030,85031 1qqqA 264 76.41 d.117.1.1 40931 2tscA 264 77.08 d.117.1.1 40952 2ao0A 324 77.70 2qe7A 502 77.99 2q9kA 151 78.36 5ptdA 298 79.86 c.1.18.2 29610 1ka9F 252 80.19 c.1.2.1 77307 1qfwH 117 81.69 b.1.1.1 20435 1ev8A 264 83.47 d.117.1.1 40989 1a6vH 120 83.92 b.1.1.1 20257 7ptdA 298 84.90 c.1.18.2 29613 1gymA 298 85.12 c.1.18.2 29606 3ptdA 298 85.23 c.1.18.2 29607 4ptdA 298 86.21 c.1.18.2 29608 2odrA 665 87.57 1dnaA 264 87.62 d.117.1.1 40956 1evfA 264 88.11 d.117.1.1 40932 2ptdA 298 88.17 c.1.18.2 29605 1v7cA 351 88.49 c.79.1.1 100446 2bjmH 120 89.20 b.1.1.1 128624 2pbdA 377 89.69 1oaqH 121 89.81 b.1.1.1 92707