# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nszA 347 5.40e-33 b.30.5.4 80724 1snzA 344 6.58e-33 b.30.5.4 98930 1lurA 339 3.57e-32 b.30.5.4 84717 1z45A 699 1.47e-30 b.30.5.4,c.2.1.2 124427,124428 1ygaA 342 2.83e-30 2cirA 297 5.47e-29 2htaA 309 2.88e-26 1jovA 270 3.85e-25 b.30.5.7 84192 3bs6A 280 0.000421 3blcA 330 0.004035 2rdyA 803 0.5245 1v7wA 807 0.6118 a.102.1.4,b.30.5.3 108411,108412 3bpoC 314 1.546 1go2A 304 1.893 b.43.4.2,c.25.1.1 76243,76244 1lf6A 684 3.505 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 3.701 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1a8d 452 4.891 2bw4A 340 5.165 b.6.1.3,b.6.1.3 129320,129321 1bquA 215 5.495 b.1.2.1,b.1.2.1 22066,22067 1a8pA 258 5.546 b.43.4.2,c.25.1.1 25654,31544 2gc7A 386 5.591 b.69.2.1 134954 1w34A 304 5.844 b.43.4.2,c.25.1.1 120620,120621 2piaA 321 7.875 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2bgiA 272 8.100 2bcjB 340 10.32 b.69.4.1 128289 1r8nA 185 11.49 b.42.4.1 104851 1lmiA 131 12.57 b.1.19.1 78098 1cd9B 215 13.92 b.1.2.1,b.1.2.1 22041,22042 1nt0A 286 16.90 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1p4tA 155 18.45 f.4.1.1 87779 1h54A 754 19.79 a.102.1.4,b.30.5.3 60634,60635 2gysA 419 20.93 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1m1zA 513 21.79 c.26.2.1,d.153.1.1 78457,78458 1ygsA 234 22.62 b.26.1.1 23907 1qfmA 710 25.10 b.69.7.1,c.69.1.4 27673,34641 2pbiB 354 28.28 2qdxA 257 28.63 2cqsA 842 28.79 2b5iB 214 29.07 b.1.2.1,b.1.2.1 127896,127897 2g8mA 264 29.07 2r5vA 357 29.84 1so9A 164 30.46 b.146.1.1 105842 1qxmA 300 32.62 b.42.2.1,b.42.2.1 96533,96534 2a46A 238 33.40 2icuA 229 33.73 2ag4A 164 34.00 b.95.1.1 126717 2bbkH 355 34.98 b.69.2.1 27634 4ubpB 126 35.57 b.85.3.1 28345 1ogiA 303 35.59 b.43.4.2,c.25.1.1 92914,92915 1y4wA 518 36.10 b.29.1.19,b.67.2.3 116470,116471 2cn3A 737 37.36 1jmxB 349 37.54 b.69.2.2 66906 1dp0A 1023 37.83 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 3bxtA 257 38.96 1gppA 237 39.02 b.86.1.2 76262 1eaxA 241 40.19 b.47.1.2 64889 1ytqA 204 40.44 b.11.1.1,b.11.1.1 124012,124013 2calA 154 40.57 1sz6B 263 41.76 b.42.2.1,b.42.2.1 112172,112173 1uliA 460 42.26 b.33.1.2,d.129.3.3 107921,107922 2d1zA 436 43.22 1j1tA 233 43.93 b.29.1.18 90771 1x8mA 288 45.30 b.82.1.13 109516 1oz2A 331 45.99 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1j71A 334 46.57 b.50.1.2 62669 2ag9A 164 48.12 1nkgA 508 50.12 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2aqqA 164 51.24 2aaiB 262 51.92 b.42.2.1,b.42.2.1 25561,25562 2ib5A 233 53.71 1thv 207 53.75 2bsaA 303 54.30 b.43.4.2,c.25.1.1 129078,129079 2vadA 223 54.38 2gw3A 225 54.68 2i51A 195 54.79 2i7rA 118 55.59 d.32.1.2 137102 2qcvA 332 55.91 2aqpA 164 56.69 1xv2A 237 61.08 d.290.1.1 116076 2htdA 140 61.54 1eerB 227 63.36 b.1.2.1,b.1.2.1 22011,22012 1axiB 236 63.79 b.1.2.1,b.1.2.1 21997,21998 3b7fA 394 66.55 2pjsA 119 66.56 1kwnA 207 66.65 b.25.1.1 77568 1sfp 114 68.35 2bmoA 447 68.98 b.33.1.2,d.129.3.3 128804,128805 2b1xA 470 69.42 b.33.1.2,d.129.3.3 127675,127676 1tfzA 424 69.52 d.32.1.3,d.32.1.3 106886,106887 2jixB 225 69.74 1cfb 205 69.85 2eixA 243 70.13 1avaC 181 70.39 b.42.4.1 25604 2g8oA 264 70.44 d.117.1.1 134779 2ivwA 113 70.52 2b9wA 424 74.73 1qg3A 195 75.15 b.1.2.1,b.1.2.1 21993,21994 1guiA 155 76.17 b.18.1.14 76351 1h2wA 710 76.44 b.69.7.1,c.69.1.4 76596,76597 3ceyA 474 76.68 1qfjA 232 76.98 b.43.4.2,c.25.1.1 25655,31545 2id0A 644 78.26 2bb2 181 78.60 1yewA 382 79.34 2q7nA 488 79.55 1or0B 528 81.93 1a65A 504 82.52 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2a50B 168 84.02 1pxvA 183 84.82 d.3.1.1 95301 1jb9A 316 85.64 b.43.4.2,c.25.1.1 62840,62841 1evfA 264 85.78 d.117.1.1 40932 2r5kA 424 85.93 1y1oA 203 86.04 c.52.1.28 116345 1reoA 486 86.48 c.3.1.2,d.16.1.5 97325,97326 2iteA 127 89.44