# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 6.93e-31 b.30.5.4 98930 1nszA 347 1.20e-30 b.30.5.4 80724 1lurA 339 4.48e-30 b.30.5.4 84717 1ygaA 342 1.13e-28 1z45A 699 1.31e-28 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 6.74e-27 2htaA 309 2.28e-24 1jovA 270 1.99e-23 b.30.5.7 84192 3bs6A 280 0.000876 3blcA 330 0.003632 2rdyA 803 0.6422 1v7wA 807 0.9118 a.102.1.4,b.30.5.3 108411,108412 1vclA 432 2.012 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3bpoC 314 2.104 1go2A 304 3.157 b.43.4.2,c.25.1.1 76243,76244 2piaA 321 4.579 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2bw4A 340 4.672 b.6.1.3,b.6.1.3 129320,129321 1a8pA 258 5.592 b.43.4.2,c.25.1.1 25654,31544 2gc7A 386 5.865 b.69.2.1 134954 1lf6A 684 5.943 a.102.1.5,b.30.5.5 77918,77919 2pbiB 354 6.507 2bcjB 340 8.069 b.69.4.1 128289 1lmiA 131 11.81 b.1.19.1 78098 1w34A 304 12.34 b.43.4.2,c.25.1.1 120620,120621 1bquA 215 14.79 b.1.2.1,b.1.2.1 22066,22067 2bgiA 272 15.26 1yewA 382 17.28 1so9A 164 19.86 b.146.1.1 105842 1j71A 334 20.05 b.50.1.2 62669 2a46A 238 20.91 1a8d 452 22.24 1r8nA 185 22.39 b.42.4.1 104851 2qdxA 257 22.59 1qxmA 300 24.88 b.42.2.1,b.42.2.1 96533,96534 4ubpB 126 25.48 b.85.3.1 28345 2h14A 317 26.07 2b5iB 214 26.82 b.1.2.1,b.1.2.1 127896,127897 1nt0A 286 26.87 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 2ag4A 164 27.05 b.95.1.1 126717 1rfs 139 28.07 2ag9A 164 28.19 1qi9A 556 30.31 a.111.1.2 19053 1h54A 754 30.34 a.102.1.4,b.30.5.3 60634,60635 1nkgA 508 31.32 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2aqpA 164 31.69 2bmoA 447 31.92 b.33.1.2,d.129.3.3 128804,128805 1y1oA 203 32.69 c.52.1.28 116345 1dp0A 1023 32.73 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1cd9B 215 35.03 b.1.2.1,b.1.2.1 22041,22042 2jixB 225 35.74 1uliA 460 36.30 b.33.1.2,d.129.3.3 107921,107922 2bbkH 355 38.47 b.69.2.1 27634 2vadA 223 41.21 1ogiA 303 41.36 b.43.4.2,c.25.1.1 92914,92915 1ygsA 234 41.64 b.26.1.1 23907 2d1zA 436 42.01 1p4tA 155 43.10 f.4.1.1 87779 2b1xA 470 44.02 b.33.1.2,d.129.3.3 127675,127676 2i51A 195 44.09 2qcvA 332 44.34 2icuA 229 45.95 2gnqA 336 48.39 3cewA 125 50.69 1m1zA 513 51.83 c.26.2.1,d.153.1.1 78457,78458 2r5vA 357 52.24 2gw3A 225 52.56 1ewkA 490 53.12 c.93.1.1 35712 2ie2A 222 55.58 2ib5A 233 56.07 1qfmA 710 56.37 b.69.7.1,c.69.1.4 27673,34641 2htdA 140 57.03 2be1A 339 57.06 2calA 154 57.36 1eaxA 241 57.82 b.47.1.2 64889 2dcnA 311 60.30 c.72.1.1 131374 3b7fA 394 60.69 2vdaA 828 60.93 1ygeA 839 61.27 a.119.1.1,b.12.1.1 19234,23634 2aqqA 164 62.54 2absA 383 62.69 c.72.1.1 126534 1avaC 181 63.31 b.42.4.1 25604 2de6A 392 64.90 b.33.1.2,d.129.3.3 131415,131416 2r0lA 248 65.77 1xv2A 237 65.79 d.290.1.1 116076 2eixA 243 65.99 1x8mA 288 66.07 b.82.1.13 109516 1ejxB 101 67.14 b.85.3.1 83183 1kcwA 1046 67.48 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1oacA 727 68.37 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ytqA 204 69.98 b.11.1.1,b.11.1.1 124012,124013 1a0rB 340 70.19 b.69.4.1 27658 1o7nA 449 71.36 b.33.1.2,d.129.3.3 81162,81163 1a65A 504 71.44 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2ivwA 113 72.42 1y4wA 518 72.67 b.29.1.19,b.67.2.3 116470,116471 1j1tA 233 74.66 b.29.1.18 90771 1eg9A 449 75.91 b.33.1.2,d.129.3.3 24443,41322 1qfjA 232 75.99 b.43.4.2,c.25.1.1 25655,31545 1qg3A 195 76.49 b.1.2.1,b.1.2.1 21993,21994 2g8mA 264 77.88 2bsaA 303 79.16 b.43.4.2,c.25.1.1 129078,129079 1hs6A 611 81.61 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2dddA 225 82.77 1fdrA 248 85.07 b.43.4.2,c.25.1.1 25653,31543 1rkdA 309 85.07 c.72.1.1 34928 1knmA 130 85.45 b.42.2.1 72781 2cn3A 737 87.14 1xssA 225 87.33 1vkdA 338 90.00 b.67.2.4 108644