# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 5.69e-33 b.30.5.4 98930 1lurA 339 8.53e-33 b.30.5.4 84717 1nszA 347 1.19e-32 b.30.5.4 80724 1z45A 699 1.70e-30 b.30.5.4,c.2.1.2 124427,124428 1ygaA 342 5.91e-30 2cirA 297 2.68e-28 2htaA 309 2.37e-26 1jovA 270 8.42e-25 b.30.5.7 84192 3bs6A 280 0.001532 3blcA 330 0.01478 1vclA 432 0.4991 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1v7wA 807 0.6657 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.6974 2bw4A 340 1.040 b.6.1.3,b.6.1.3 129320,129321 1x8mA 288 1.272 b.82.1.13 109516 1h54A 754 1.489 a.102.1.4,b.30.5.3 60634,60635 1h2wA 710 1.490 b.69.7.1,c.69.1.4 76596,76597 1qwrA 319 1.597 b.82.1.3 96491 1lf6A 684 2.327 a.102.1.5,b.30.5.5 77918,77919 1qxmA 300 2.520 b.42.2.1,b.42.2.1 96533,96534 1nkgA 508 3.221 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2piaA 321 3.290 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 4ubpB 126 4.283 b.85.3.1 28345 1go2A 304 5.021 b.43.4.2,c.25.1.1 76243,76244 2j5wA 1065 5.432 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 2aaiB 262 6.021 b.42.2.1,b.42.2.1 25561,25562 1y43B 173 8.048 1a8d 452 8.691 2cqsA 842 8.778 1a8pA 258 9.004 b.43.4.2,c.25.1.1 25654,31544 1ejxB 101 9.111 b.85.3.1 83183 1so9A 164 9.404 b.146.1.1 105842 1qfmA 710 9.406 b.69.7.1,c.69.1.4 27673,34641 2r5vA 357 9.631 2bgiA 272 11.59 1dfcA 493 12.68 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 2d1zA 436 13.84 1w34A 304 15.59 b.43.4.2,c.25.1.1 120620,120621 2g30A 258 17.27 b.1.10.1,d.105.1.1 134546,134547 3bpoC 314 17.46 2ivwA 113 18.65 3c5mA 396 18.79 1r8nA 185 19.73 b.42.4.1 104851 1a65A 504 21.05 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2pbiB 354 21.75 2eabA 899 22.89 2ac1A 541 22.95 2hesX 330 22.95 1m2tB 263 24.62 b.42.2.1,b.42.2.1 84762,84763 2ihoA 293 24.93 2h14A 317 25.86 2bcjB 340 26.38 b.69.4.1 128289 2qdxA 257 26.66 1abrB 267 26.72 b.42.2.1,b.42.2.1 25563,25564 2gc7A 386 27.44 b.69.2.1 134954 1e42A 258 27.75 b.1.10.1,d.105.1.1 22316,40792 1knmA 130 27.97 b.42.2.1 72781 1erjA 393 28.49 b.69.4.1 27660 2htuA 390 28.65 2qcvA 332 28.70 2zl4A 196 30.42 2hrgA 496 31.09 2fp8A 322 32.47 2a46A 238 32.91 2vgnA 386 36.34 2ppeA 343 37.30 1kcwA 1046 37.34 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1yewA 382 38.51 1v0eA 666 38.60 b.68.1.2,b.108.1.3 113466,113467 2bbkH 355 39.03 b.69.2.1 27634 1bquA 215 39.92 b.1.2.1,b.1.2.1 22066,22067 1pjxA 314 41.08 b.68.6.1 104167 1kcbA 340 41.24 b.6.1.3,b.6.1.3 90951,90952 2gnqA 336 41.55 1gotB 340 42.72 b.69.4.1 27648 2calA 154 42.88 1y4wA 518 43.00 b.29.1.19,b.67.2.3 116470,116471 2a9dA 372 43.54 b.1.18.6,d.176.1.1 126431,126432 1reoA 486 43.61 c.3.1.2,d.16.1.5 97325,97326 2be1A 339 44.62 1zxuA 217 45.64 d.23.1.2 125796 2hqsA 415 45.70 b.68.4.1,c.51.2.1 136662,136663 1exg 110 45.71 1vjjA 692 45.85 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1jmxB 349 46.16 b.69.2.2 66906 1zpuA 534 46.46 1ex0A 731 46.80 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1sddA 306 48.11 b.6.1.3,b.6.1.3 105431,105432 1am2 199 48.43 1yiqA 689 48.79 1mppA 361 48.89 b.50.1.2 26856 1nhp 447 49.01 1mzyA 333 49.02 b.6.1.3,b.6.1.3 103848,103849 1lmiA 131 49.77 b.1.19.1 78098 1sz6B 263 49.99 b.42.2.1,b.42.2.1 112172,112173 1nt0A 286 51.59 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 2eixA 243 51.80 2b5iB 214 53.76 b.1.2.1,b.1.2.1 127896,127897 1or0B 528 56.61 1zdsA 336 58.00 b.6.1.3,b.6.1.3 124952,124953 2g8mA 264 58.17 1qniA 581 58.26 b.6.1.4,b.69.3.1 23042,27642 1oz2A 331 58.51 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2i51A 195 60.27 1rfs 139 60.31 2d1sA 548 62.23 1qg3A 195 62.26 b.1.2.1,b.1.2.1 21993,21994 2htdA 140 66.47 1rznA 205 67.34 c.52.1.28 111981 1j71A 334 67.58 b.50.1.2 62669 1eerB 227 68.49 b.1.2.1,b.1.2.1 22011,22012 1lci 550 69.45 1wxrA 1048 70.38 1a02N 301 70.45 b.1.18.1,b.2.5.3 21923,22440 2vadA 223 70.86 2i7rA 118 71.63 d.32.1.2 137102 1ep3B 262 72.48 b.43.4.2,c.25.1.3 25664,31554 1ogiA 303 73.15 b.43.4.2,c.25.1.1 92914,92915 2h9fA 396 74.02 1aozA 552 74.17 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2ib5A 233 74.22 1y1oA 203 74.25 c.52.1.28 116345 1rkdA 309 74.63 c.72.1.1 34928 1vkdA 338 76.58 b.67.2.4 108644 3b7fA 394 76.75 1dmhA 311 76.97 b.3.6.1 22633 1ejnA 253 79.08 b.47.1.2 26356 1zdyA 307 79.78 d.313.1.1 124961 1sqiA 393 79.95 d.32.1.3,d.32.1.3 105914,105915 2vouA 397 81.46 1tfzA 424 81.91 d.32.1.3,d.32.1.3 106886,106887 1dp4A 435 82.66 c.93.1.1 35710 2gw3A 225 83.02 1qi9A 556 83.12 a.111.1.2 19053 1qqqA 264 83.94 d.117.1.1 40931 2fzsA 193 85.43 c.14.1.1 134462 1ten 90 85.66 1lnsA 763 86.14 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2id0A 644 86.52 1y7oA 218 87.32 c.14.1.1 122701 2p25A 126 87.51 1jofA 365 87.82 b.69.10.1 71775 1vqoA 240 89.64 b.34.5.3,b.40.4.5 120361,120362 2d40A 354 89.92