# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 2.96e-32 b.30.5.4 98930 1nszA 347 6.01e-32 b.30.5.4 80724 1lurA 339 1.22e-31 b.30.5.4 84717 1ygaA 342 3.19e-30 1z45A 699 9.09e-30 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 7.67e-29 2htaA 309 1.49e-26 1jovA 270 6.07e-25 b.30.5.7 84192 3bs6A 280 0.001133 3blcA 330 0.003343 1v7wA 807 0.2582 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.4910 1lf6A 684 1.124 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 1.734 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2piaA 321 2.554 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3bpoC 314 2.693 1a8d 452 3.119 1h2wA 710 4.558 b.69.7.1,c.69.1.4 76596,76597 2bcjB 340 5.529 b.69.4.1 128289 1go2A 304 6.187 b.43.4.2,c.25.1.1 76243,76244 1qfmA 710 6.616 b.69.7.1,c.69.1.4 27673,34641 2r5vA 357 7.113 1y4wA 518 8.684 b.29.1.19,b.67.2.3 116470,116471 1qxmA 300 8.990 b.42.2.1,b.42.2.1 96533,96534 2g8mA 264 10.19 2ib5A 233 10.52 1lmiA 131 12.43 b.1.19.1 78098 1w34A 304 14.25 b.43.4.2,c.25.1.1 120620,120621 1r8nA 185 14.61 b.42.4.1 104851 2a46A 238 14.71 1x8mA 288 15.16 b.82.1.13 109516 2gw3A 225 15.75 2pbiB 354 16.06 1reoA 486 16.17 c.3.1.2,d.16.1.5 97325,97326 2vadA 223 16.95 2bbkH 355 18.40 b.69.2.1 27634 2cqsA 842 18.42 1j71A 334 20.80 b.50.1.2 62669 1cd9B 215 20.93 b.1.2.1,b.1.2.1 22041,22042 2bw4A 340 21.07 b.6.1.3,b.6.1.3 129320,129321 1uliA 460 24.63 b.33.1.2,d.129.3.3 107921,107922 2i7rA 118 26.31 d.32.1.2 137102 1a8pA 258 26.41 b.43.4.2,c.25.1.1 25654,31544 2gc7A 386 26.74 b.69.2.1 134954 1qi9A 556 26.99 a.111.1.2 19053 1bquA 215 27.04 b.1.2.1,b.1.2.1 22066,22067 2g8oA 264 27.72 d.117.1.1 134779 1mppA 361 27.98 b.50.1.2 26856 2ag4A 164 28.08 b.95.1.1 126717 1bkpA 278 28.57 d.117.1.1 41029 1evfA 264 29.23 d.117.1.1 40932 1tyvA 554 29.80 b.80.1.6 28038 2b1xA 470 31.59 b.33.1.2,d.129.3.3 127675,127676 1sz6B 263 33.69 b.42.2.1,b.42.2.1 112172,112173 1oz2A 331 35.22 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1qqqA 264 36.34 d.117.1.1 40931 2ie2A 222 36.37 1xv2A 237 37.88 d.290.1.1 116076 2aaiB 262 37.92 b.42.2.1,b.42.2.1 25561,25562 2bgiA 272 39.01 3bxtA 257 40.64 1hvyA 288 43.56 d.117.1.1 41049 2ag9A 164 44.45 2ivwA 113 44.74 1jmxB 349 45.17 b.69.2.2 66906 2c9jA 223 45.77 1tfzA 424 46.07 d.32.1.3,d.32.1.3 106886,106887 1bjmA 216 46.88 b.1.1.1,b.1.1.2 20524,21460 1nkgA 508 47.21 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2h5oA 234 47.45 2icrA 237 48.27 1or0B 528 48.36 3c5mA 396 48.38 2dddA 225 49.29 2gw4B 162 49.68 1zdyA 307 51.35 d.313.1.1 124961 2calA 154 51.73 2eabA 899 52.18 1ev5A 264 52.28 d.117.1.1 40935 1y43B 173 52.34 1xssA 225 52.75 1zgoA 223 53.24 2aqpA 164 55.13 1qksA 567 55.61 a.3.1.2,b.70.2.1 15951,27710 2b5iB 214 56.34 b.1.2.1,b.1.2.1 127896,127897 2a50B 168 60.31 1so9A 164 60.52 b.146.1.1 105842 2h14A 317 60.59 2gnqA 336 61.64 2vgnA 386 61.82 1ygeA 839 62.57 a.119.1.1,b.12.1.1 19234,23634 2aqqA 164 62.68 4ubpB 126 63.72 b.85.3.1 28345 2p4mA 219 64.50 1h54A 754 64.63 a.102.1.4,b.30.5.3 60634,60635 1eaxA 241 64.93 b.47.1.2 64889 1a0rB 340 65.92 b.69.4.1 27658 1yewA 382 65.94 1fm2B 520 66.09 2bmoA 447 66.80 b.33.1.2,d.129.3.3 128804,128805 1wleA 501 68.48 1sqiA 393 68.89 d.32.1.3,d.32.1.3 105914,105915 1p4tA 155 68.98 f.4.1.1 87779 2htuA 390 70.43 2eixA 243 71.72 2ojhA 297 73.38 1kgcE 242 73.93 b.1.1.1,b.1.1.2 77386,77387 2h0vA 338 78.19 1zuxA 224 78.63 2j7qA 232 78.70 2iteA 127 80.04 3cpnA 330 80.20 2hqkA 219 85.55 2i51A 195 85.90 1sefA 274 86.68 b.82.1.11 105452 1i4uA 181 86.83 b.60.1.1 61732 1jaeA 471 87.70 b.71.1.1,c.1.8.1 27773,28760 2b9wA 424 88.40 1q7fA 286 89.54 b.68.9.1 96036