# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 7.19e-34 b.30.5.4 98930 1nszA 347 9.27e-34 b.30.5.4 80724 1lurA 339 4.44e-33 b.30.5.4 84717 1ygaA 342 1.23e-31 1z45A 699 2.95e-31 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 2.89e-30 2htaA 309 9.58e-28 1jovA 270 2.88e-26 b.30.5.7 84192 3bs6A 280 0.002351 3blcA 330 0.007385 2rdyA 803 0.4397 1v7wA 807 0.4722 a.102.1.4,b.30.5.3 108411,108412 1lf6A 684 0.6493 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 2.190 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3bpoC 314 2.216 1qfmA 710 3.325 b.69.7.1,c.69.1.4 27673,34641 2piaA 321 3.474 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1a8d 452 3.807 1h2wA 710 4.846 b.69.7.1,c.69.1.4 76596,76597 1go2A 304 5.744 b.43.4.2,c.25.1.1 76243,76244 1r8nA 185 5.963 b.42.4.1 104851 1y4wA 518 8.928 b.29.1.19,b.67.2.3 116470,116471 1qi9A 556 9.083 a.111.1.2 19053 1lmiA 131 10.26 b.1.19.1 78098 2r5vA 357 10.72 2bcjB 340 11.08 b.69.4.1 128289 1x8mA 288 13.25 b.82.1.13 109516 2g8mA 264 13.59 2bbkH 355 13.84 b.69.2.1 27634 1w34A 304 16.18 b.43.4.2,c.25.1.1 120620,120621 2a46A 238 17.68 2ib5A 233 17.89 1a8pA 258 17.93 b.43.4.2,c.25.1.1 25654,31544 1uliA 460 19.05 b.33.1.2,d.129.3.3 107921,107922 2bw4A 340 19.74 b.6.1.3,b.6.1.3 129320,129321 2i7rA 118 20.19 d.32.1.2 137102 1tyvA 554 22.52 b.80.1.6 28038 2bgiA 272 24.46 1qxmA 300 25.24 b.42.2.1,b.42.2.1 96533,96534 1reoA 486 27.17 c.3.1.2,d.16.1.5 97325,97326 1w1oA 534 28.40 d.58.32.4,d.145.1.1 109071,109072 1oz2A 331 28.86 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1bquA 215 29.49 b.1.2.1,b.1.2.1 22066,22067 1cd9B 215 29.55 b.1.2.1,b.1.2.1 22041,22042 1wleA 501 31.36 2ag4A 164 32.33 b.95.1.1 126717 1j71A 334 32.60 b.50.1.2 62669 2gw3A 225 32.72 2g8oA 264 32.90 d.117.1.1 134779 1xv2A 237 33.70 d.290.1.1 116076 1ygeA 839 33.80 a.119.1.1,b.12.1.1 19234,23634 2vadA 223 35.12 1nkgA 508 37.87 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2pbiB 354 38.86 1gppA 237 40.85 b.86.1.2 76262 2vgnA 386 41.26 2b5iB 214 42.91 b.1.2.1,b.1.2.1 127896,127897 1evfA 264 42.94 d.117.1.1 40932 2glfA 450 43.04 4ubpB 126 43.21 b.85.3.1 28345 1so9A 164 44.15 b.146.1.1 105842 2h0vA 338 46.00 1bkpA 278 46.35 d.117.1.1 41029 2b1xA 470 47.20 b.33.1.2,d.129.3.3 127675,127676 2cqsA 842 47.65 2calA 154 47.67 1mpxA 615 48.28 b.18.1.13,c.69.1.21 85041,85042 1p4tA 155 51.36 f.4.1.1 87779 1sqiA 393 51.83 d.32.1.3,d.32.1.3 105914,105915 1qqqA 264 52.04 d.117.1.1 40931 2ag9A 164 52.30 1sefA 274 52.60 b.82.1.11 105452 1eaxA 241 54.64 b.47.1.2 64889 1vj1A 363 56.01 b.35.1.2,c.2.1.1 100794,100795 1zdyA 307 56.74 d.313.1.1 124961 1hvyA 288 60.13 d.117.1.1 41049 2ie2A 222 61.07 1ogiA 303 61.36 b.43.4.2,c.25.1.1 92914,92915 1lnsA 763 61.81 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2eixA 243 63.97 1ev5A 264 64.80 d.117.1.1 40935 1qwrA 319 64.84 b.82.1.3 96491 1y1oA 203 65.22 c.52.1.28 116345 2aqpA 164 65.74 2icrA 237 67.11 1or0B 528 69.13 2gc7A 386 70.67 b.69.2.1 134954 1rfs 139 71.46 1nt0A 286 72.12 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1xocA 520 76.31 c.94.1.1 122201 2d1zA 436 77.07 2ivwA 113 77.32 2aqqA 164 77.60 1ytqA 204 77.89 b.11.1.1,b.11.1.1 124012,124013 2bmoA 447 78.14 b.33.1.2,d.129.3.3 128804,128805 1ygsA 234 78.63 b.26.1.1 23907 2h5oA 234 78.83 1kwnA 207 80.11 b.25.1.1 77568 1mppA 361 81.13 b.50.1.2 26856 1ejxB 101 81.92 b.85.3.1 83183 2dddA 225 83.20 1nekA 588 83.44 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428