# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 2.17e-34 b.30.5.4 98930 1nszA 347 2.67e-34 b.30.5.4 80724 1lurA 339 1.25e-33 b.30.5.4 84717 1ygaA 342 5.03e-32 1z45A 699 1.01e-31 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 9.92e-31 2htaA 309 4.60e-28 1jovA 270 1.17e-26 b.30.5.7 84192 3bs6A 280 0.001109 3blcA 330 0.004685 1v7wA 807 0.2935 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.3435 1lf6A 684 0.9177 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 2.101 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3bpoC 314 3.021 1a8d 452 3.129 1go2A 304 4.227 b.43.4.2,c.25.1.1 76243,76244 2piaA 321 4.330 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1qfmA 710 4.610 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 6.142 b.69.7.1,c.69.1.4 76596,76597 1y4wA 518 6.432 b.29.1.19,b.67.2.3 116470,116471 1r8nA 185 7.119 b.42.4.1 104851 1x8mA 288 7.124 b.82.1.13 109516 2r5vA 357 8.092 2bbkH 355 10.95 b.69.2.1 27634 1lmiA 131 11.21 b.1.19.1 78098 2bcjB 340 11.53 b.69.4.1 128289 2bw4A 340 11.86 b.6.1.3,b.6.1.3 129320,129321 1w34A 304 14.32 b.43.4.2,c.25.1.1 120620,120621 1qi9A 556 14.96 a.111.1.2 19053 1a8pA 258 15.19 b.43.4.2,c.25.1.1 25654,31544 2g8mA 264 16.02 1uliA 460 17.47 b.33.1.2,d.129.3.3 107921,107922 1j71A 334 18.93 b.50.1.2 62669 1reoA 486 19.37 c.3.1.2,d.16.1.5 97325,97326 2a46A 238 19.40 2bgiA 272 21.11 2ib5A 233 22.36 1qxmA 300 25.39 b.42.2.1,b.42.2.1 96533,96534 1cd9B 215 26.94 b.1.2.1,b.1.2.1 22041,22042 1oz2A 331 27.21 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1nkgA 508 27.27 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1xv2A 237 27.77 d.290.1.1 116076 2ag4A 164 28.29 b.95.1.1 126717 1gppA 237 29.24 b.86.1.2 76262 2i7rA 118 32.02 d.32.1.2 137102 2b1xA 470 35.09 b.33.1.2,d.129.3.3 127675,127676 1ygeA 839 35.29 a.119.1.1,b.12.1.1 19234,23634 1sefA 274 35.56 b.82.1.11 105452 2calA 154 36.54 2h0vA 338 36.60 4ubpB 126 38.15 b.85.3.1 28345 1so9A 164 38.44 b.146.1.1 105842 2g8oA 264 39.56 d.117.1.1 134779 2b5iB 214 40.19 b.1.2.1,b.1.2.1 127896,127897 1mppA 361 40.81 b.50.1.2 26856 2gw3A 225 40.93 1y1oA 203 41.08 c.52.1.28 116345 1bquA 215 41.27 b.1.2.1,b.1.2.1 22066,22067 1sqiA 393 41.99 d.32.1.3,d.32.1.3 105914,105915 1tyvA 554 42.96 b.80.1.6 28038 2pbiB 354 43.00 1w1oA 534 44.03 d.58.32.4,d.145.1.1 109071,109072 1zdyA 307 44.67 d.313.1.1 124961 2vadA 223 45.42 2ag9A 164 45.44 1ogiA 303 45.75 b.43.4.2,c.25.1.1 92914,92915 1eaxA 241 46.07 b.47.1.2 64889 1p4tA 155 49.01 f.4.1.1 87779 2bmoA 447 52.36 b.33.1.2,d.129.3.3 128804,128805 2aqpA 164 52.46 1evfA 264 53.30 d.117.1.1 40932 1wleA 501 54.77 2cqsA 842 56.53 1bkpA 278 59.31 d.117.1.1 41029 2vgnA 386 59.99 2aqqA 164 61.97 2ivwA 113 62.89 1or0B 528 63.50 1qwrA 319 65.15 b.82.1.3 96491 2eixA 243 68.44 1ygsA 234 68.62 b.26.1.1 23907 1hvyA 288 70.65 d.117.1.1 41049 3bxtA 257 70.94 1rznA 205 72.72 c.52.1.28 111981 2ie2A 222 75.56 1nt0A 286 76.44 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1ytqA 204 76.65 b.11.1.1,b.11.1.1 124012,124013 2glfA 450 78.90 1ejxB 101 79.22 b.85.3.1 83183 1qqqA 264 79.94 d.117.1.1 40931 2o8qA 134 81.52 2gc7A 386 83.12 b.69.2.1 134954 1rfs 139 83.41 1kgcE 242 83.91 b.1.1.1,b.1.1.2 77386,77387 1nl1A 147 85.47 g.14.1.1,g.32.1.1 91949,91950 2iteA 127 86.51 1kwnA 207 88.17 b.25.1.1 77568