# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nszA 347 2.03e-40 b.30.5.4 80724 1snzA 344 2.49e-40 b.30.5.4 98930 1lurA 339 3.55e-40 b.30.5.4 84717 1ygaA 342 1.31e-37 1z45A 699 5.26e-37 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 3.55e-35 2htaA 309 5.33e-33 1jovA 270 3.47e-30 b.30.5.7 84192 3bs6A 280 1.36e-05 3blcA 330 0.000317 2rdyA 803 0.8867 1bkpA 278 1.334 d.117.1.1 41029 1v7wA 807 1.370 a.102.1.4,b.30.5.3 108411,108412 2g8mA 264 2.109 1lf6A 684 2.170 a.102.1.5,b.30.5.5 77918,77919 1hvyA 288 3.636 d.117.1.1 41049 2g8oA 264 5.112 d.117.1.1 134779 1x8mA 288 6.261 b.82.1.13 109516 1qqqA 264 6.818 d.117.1.1 40931 1evfA 264 7.159 d.117.1.1 40932 2r5vA 357 7.266 1zvdA 380 9.248 1ev5A 264 9.477 d.117.1.1 40935 2piaA 321 12.95 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1f28A 297 16.81 d.117.1.1 59608 1sqnA 261 19.22 a.123.1.1 105944 2bw4A 340 19.49 b.6.1.3,b.6.1.3 129320,129321 2b9wA 424 20.63 1lmiA 131 20.64 b.1.19.1 78098 1yewA 382 22.42 1iueA 98 23.91 d.15.4.1 90697 1frrA 95 32.27 d.15.4.1 37674 1bquA 215 33.37 b.1.2.1,b.1.2.1 22066,22067 1guqA 348 33.60 d.13.1.2,d.13.1.2 37522,37523 1zdyA 307 34.18 d.313.1.1 124961 2d73A 738 34.56 1zdsA 336 37.04 b.6.1.3,b.6.1.3 124952,124953 1ypvA 313 37.28 2ivwA 113 38.14 1qxmA 300 40.73 b.42.2.1,b.42.2.1 96533,96534 4ubpB 126 41.32 b.85.3.1 28345 2htuA 390 43.12 2e18A 257 43.23 1cd9B 215 43.82 b.1.2.1,b.1.2.1 22041,22042 1uliA 460 44.53 b.33.1.2,d.129.3.3 107921,107922 1qi9A 556 45.01 a.111.1.2 19053 1exg 110 46.04 1cfb 205 46.17 2bmoA 447 48.86 b.33.1.2,d.129.3.3 128804,128805 1ze3H 122 49.20 b.2.3.2 124977 2yy8A 201 51.92 1r8nA 185 52.81 b.42.4.1 104851 1s4bP 674 52.82 d.92.1.5 105252 1snrA 341 53.00 b.6.1.3,b.6.1.3 105823,105824 3b9tA 484 53.79 1wx0A 223 57.46 c.1.10.1 121382 1ivyA 452 57.67 c.69.1.5 34654 1vjjA 692 57.99 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 3bpoC 314 59.95 2hlsA 243 60.45 1cby 259 60.71 1offA 97 62.12 d.15.4.1 86947 1tfzA 424 62.95 d.32.1.3,d.32.1.3 106886,106887 1p99A 295 63.33 c.94.1.1 94384 1jb7A 495 69.54 b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 2ixsA 323 70.08 1gqnA 252 70.12 c.1.10.1 90514 1z3iX 644 70.46 c.37.1.19,c.37.1.19 124406,124407 1sqiA 393 71.87 d.32.1.3,d.32.1.3 105914,105915 1x1fA 149 72.41 b.55.1.1 121579 1czpA 98 72.69 d.15.4.1 37645 2qa1A 500 75.39 1sflA 238 78.75 c.1.10.1 112077 1g43A 160 79.46 b.2.2.2 22392 1wl8A 189 80.37 c.23.16.1 120997 2eixA 243 81.53 1p0fA 373 83.62 b.35.1.2,c.2.1.1 87642,87643 1e4mM 501 87.07 c.1.8.4 59226