# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 3.68e-31 b.30.5.4 98930 1nszA 347 6.31e-31 b.30.5.4 80724 1lurA 339 1.78e-30 b.30.5.4 84717 1ygaA 342 1.26e-28 1z45A 699 1.58e-28 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 6.99e-28 2htaA 309 4.58e-25 1jovA 270 6.05e-24 b.30.5.7 84192 3bs6A 280 0.002098 3blcA 330 0.006145 1v7wA 807 0.2642 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 1.043 1vclA 432 1.883 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1lf6A 684 2.161 a.102.1.5,b.30.5.5 77918,77919 2piaA 321 2.483 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2bcjB 340 2.740 b.69.4.1 128289 2pbiB 354 3.842 1y4wA 518 5.038 b.29.1.19,b.67.2.3 116470,116471 1h2wA 710 5.187 b.69.7.1,c.69.1.4 76596,76597 1go2A 304 6.039 b.43.4.2,c.25.1.1 76243,76244 1a8d 452 8.662 1qfmA 710 9.329 b.69.7.1,c.69.1.4 27673,34641 2r5vA 357 11.02 3bpoC 314 11.56 1jmxB 349 12.20 b.69.2.2 66906 1qxmA 300 12.21 b.42.2.1,b.42.2.1 96533,96534 1a0rB 340 13.14 b.69.4.1 27658 1w34A 304 14.58 b.43.4.2,c.25.1.1 120620,120621 1reoA 486 14.78 c.3.1.2,d.16.1.5 97325,97326 1lmiA 131 15.24 b.1.19.1 78098 1a8pA 258 16.82 b.43.4.2,c.25.1.1 25654,31544 2hqsA 415 17.07 b.68.4.1,c.51.2.1 136662,136663 2ib5A 233 18.24 1r8nA 185 18.40 b.42.4.1 104851 2gc7A 386 19.48 b.69.2.1 134954 2a46A 238 20.23 2h14A 317 22.29 2bw4A 340 23.51 b.6.1.3,b.6.1.3 129320,129321 2g8mA 264 23.66 1sz6B 263 23.75 b.42.2.1,b.42.2.1 112172,112173 1y43B 173 23.77 2bbkH 355 24.69 b.69.2.1 27634 2gw3A 225 25.22 1cd9B 215 27.30 b.1.2.1,b.1.2.1 22041,22042 2b1xA 470 27.38 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 27.58 b.33.1.2,d.129.3.3 107921,107922 3bxtA 257 27.98 1or0B 528 29.51 3c5mA 396 30.15 2b5iB 214 31.06 b.1.2.1,b.1.2.1 127896,127897 2gnqA 336 31.30 1qksA 567 31.41 a.3.1.2,b.70.2.1 15951,27710 1tyvA 554 32.47 b.80.1.6 28038 1bquA 215 33.14 b.1.2.1,b.1.2.1 22066,22067 1j71A 334 34.13 b.50.1.2 62669 2vadA 223 35.46 2cqsA 842 36.73 2ivwA 113 37.24 1x8mA 288 37.29 b.82.1.13 109516 1qi9A 556 38.31 a.111.1.2 19053 1mppA 361 38.49 b.50.1.2 26856 1oz2A 331 38.78 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1pjxA 314 39.03 b.68.6.1 104167 1xv2A 237 40.00 d.290.1.1 116076 2ojhA 297 41.76 3b7fA 394 43.59 1e42A 258 43.90 b.1.10.1,d.105.1.1 22316,40792 1h54A 754 45.67 a.102.1.4,b.30.5.3 60634,60635 2ag4A 164 46.77 b.95.1.1 126717 2eixA 243 47.69 2bgiA 272 47.75 4ubpB 126 48.26 b.85.3.1 28345 2g8oA 264 48.57 d.117.1.1 134779 1dfcA 493 48.83 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 2cx1A 187 49.81 b.122.1.1,d.17.6.4 130967,130968 2bmoA 447 51.29 b.33.1.2,d.129.3.3 128804,128805 1ytqA 204 52.51 b.11.1.1,b.11.1.1 124012,124013 1yiqA 689 53.68 1bjmA 216 53.98 b.1.1.1,b.1.1.2 20524,21460 1so9A 164 54.51 b.146.1.1 105842 1gotB 340 55.22 b.69.4.1 27648 1nkgA 508 55.78 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1hvyA 288 55.92 d.117.1.1 41049 1kgcE 242 57.96 b.1.1.1,b.1.1.2 77386,77387 1fm2B 520 58.37 2calA 154 60.49 3cgvA 397 60.66 2eabA 899 61.23 2hesX 330 61.98 1xh3A 276 62.66 b.1.1.2,d.19.1.1 115287,115288 2vouA 397 62.75 2g30A 258 64.12 b.1.10.1,d.105.1.1 134546,134547 2dddA 225 64.36 2vgnA 386 64.76 3cpnA 330 65.64 2c9jA 223 65.84 2qcvA 332 66.66 2cn3A 737 68.15 2i7rA 118 68.33 d.32.1.2 137102 1zxuA 217 68.39 d.23.1.2 125796 1bkpA 278 69.70 d.117.1.1 41029 1evfA 264 69.93 d.117.1.1 40932 2gw4B 162 70.69 2ie2A 222 71.58 1xssA 225 71.65 2htuA 390 72.08 1jofA 365 73.29 b.69.10.1 71775 1ogiA 303 73.49 b.43.4.2,c.25.1.1 92914,92915 1ri6A 343 73.52 b.69.11.1 97503 1vkdA 338 73.58 b.67.2.4 108644 1qwrA 319 73.59 b.82.1.3 96491 2ag9A 164 74.83 2d1zA 436 77.18 2qa1A 500 77.34 1o7nA 449 77.60 b.33.1.2,d.129.3.3 81162,81163 1sq9A 397 78.34 b.69.4.1 105889 2cy5A 140 80.33 b.55.1.2 131018 2b3nA 159 81.66 d.38.1.4 127792 1p4tA 155 81.69 f.4.1.1 87779 1m2tB 263 81.75 b.42.2.1,b.42.2.1 84762,84763 1ammA 174 82.11 b.11.1.1,b.11.1.1 23587,23588 1qqqA 264 82.78 d.117.1.1 40931 3ceyA 474 83.54 2i8tA 167 84.42 3ckzA 385 85.29 1qg3A 195 85.32 b.1.2.1,b.1.2.1 21993,21994 2a50B 168 86.52 2i51A 195 88.26 1tfzA 424 88.73 d.32.1.3,d.32.1.3 106886,106887 2iteA 127 89.22