# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 1.78e-28 b.30.5.4 98930 1nszA 347 8.54e-28 b.30.5.4 80724 1lurA 339 3.47e-27 b.30.5.4 84717 1ygaA 342 5.40e-26 2cirA 297 1.92e-25 1z45A 699 2.79e-23 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.28e-22 1jovA 270 7.02e-21 b.30.5.7 84192 3bs6A 280 0.002712 3blcA 330 0.009396 1lf6A 684 0.4765 a.102.1.5,b.30.5.5 77918,77919 1a8d 452 0.8565 1v7wA 807 1.124 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 1.275 1vclA 432 1.547 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2piaA 321 3.495 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1k32A 1045 3.662 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1e3aB 560 4.740 3ceyA 474 4.844 1vjjA 692 6.024 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 3b7fA 394 6.507 3bpoC 314 8.555 1pcxA 810 8.622 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1qfmA 710 8.822 b.69.7.1,c.69.1.4 27673,34641 1j71A 334 9.692 b.50.1.2 62669 2vgnA 386 9.696 2cduA 452 11.33 1r8nA 185 12.01 b.42.4.1 104851 2a46A 238 13.37 2vnuD 760 13.43 1hs6A 611 13.52 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2bcjB 340 13.98 b.69.4.1 128289 1reoA 486 14.21 c.3.1.2,d.16.1.5 97325,97326 2r5vA 357 15.42 1oz2A 331 17.30 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2ib5A 233 17.42 1a8pA 258 18.10 b.43.4.2,c.25.1.1 25654,31544 1xocA 520 18.14 c.94.1.1 122201 2gc7A 386 19.76 b.69.2.1 134954 1uqwA 509 20.15 c.94.1.1 99799 1qxmA 300 20.50 b.42.2.1,b.42.2.1 96533,96534 2ovrB 445 22.86 1w34A 304 23.60 b.43.4.2,c.25.1.1 120620,120621 1lmiA 131 23.89 b.1.19.1 78098 1kcwA 1046 24.32 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1p4tA 155 25.23 f.4.1.1 87779 2pbiB 354 25.37 1zvdA 380 26.36 2v3zA 440 26.55 1nhsA 447 27.90 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1h2wA 710 27.91 b.69.7.1,c.69.1.4 76596,76597 1kolA 398 28.10 b.35.1.2,c.2.1.1 77474,77475 2b1xA 470 29.87 b.33.1.2,d.129.3.3 127675,127676 1sz6B 263 30.37 b.42.2.1,b.42.2.1 112172,112173 1nt0A 286 30.67 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1tf5A 844 31.29 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2vadA 223 31.66 2bgiA 272 34.37 1cd9B 215 35.57 b.1.2.1,b.1.2.1 22041,22042 1ytqA 204 35.78 b.11.1.1,b.11.1.1 124012,124013 1nhp 447 37.14 1tyvA 554 38.36 b.80.1.6 28038 1kl1A 419 38.76 c.67.1.4 72663 1h54A 754 39.88 a.102.1.4,b.30.5.3 60634,60635 2bmoA 447 40.26 b.33.1.2,d.129.3.3 128804,128805 1uliA 460 40.33 b.33.1.2,d.129.3.3 107921,107922 2bw4A 340 41.10 b.6.1.3,b.6.1.3 129320,129321 1or0B 528 42.27 2ckfA 454 42.71 1fepA 724 43.36 f.4.3.3 43808 1gppA 237 43.94 b.86.1.2 76262 2gufA 594 44.25 f.4.3.3 135736 1go2A 304 45.80 b.43.4.2,c.25.1.1 76243,76244 1qwrA 319 47.06 b.82.1.3 96491 2cmzA 423 47.12 3bc9A 599 47.14 2bvfA 459 47.78 1sefA 274 48.02 b.82.1.11 105452 1td5A 202 48.11 d.110.2.2 106767 3bxtA 257 48.99 2ag4A 164 49.02 b.95.1.1 126717 2dddA 225 49.17 2vj8A 611 49.69 2ag9A 164 49.70 1nkgA 508 52.39 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1dpeA 507 53.83 c.94.1.1 35799 1q8iA 783 54.20 c.55.3.5,e.8.1.1 96208,96209 2gw3A 225 54.74 2e57A 637 54.80 1hvyA 288 55.53 d.117.1.1 41049 2e7uA 424 56.53 2b9wA 424 56.60 2gbwA 454 57.03 2ojhA 297 57.57 2b5iB 214 58.18 b.1.2.1,b.1.2.1 127896,127897 1so9A 164 59.31 b.146.1.1 105842 1ledA 243 61.31 b.29.1.1 24039 2i7rA 118 61.34 d.32.1.2 137102 1qg3A 195 63.41 b.1.2.1,b.1.2.1 21993,21994 1npmA 225 64.28 b.47.1.2 26070 2calA 154 64.56 2qdxA 257 64.90 2g50A 530 68.48 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 3choA 610 68.95 1m2tB 263 69.39 b.42.2.1,b.42.2.1 84762,84763 1aozA 552 69.47 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2ie2A 222 72.03 2icrA 237 73.52 1am2A 199 74.14 b.86.1.2 28381 2btvA 901 74.34 e.28.1.1 43376 2c9jA 223 74.53 1zjkA 403 74.71 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1wba 175 75.91 2eixA 243 76.28 1hdhA 536 77.99 c.76.1.2 65805 1xssA 225 78.81 1ygsA 234 78.90 b.26.1.1 23907 1hwxA 501 81.10 c.2.1.7,c.58.1.1 30250,33898 1bx4A 345 81.82 c.72.1.1 34935 1nhpA 447 82.31 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1bquA 215 82.66 b.1.2.1,b.1.2.1 22066,22067 1p7hL 286 82.70 b.1.18.1,b.2.5.3 94271,94272 1mkfA 382 83.66 b.116.1.1 79232 2r47A 157 84.29 2de6A 392 84.42 b.33.1.2,d.129.3.3 131415,131416 1vj1A 363 85.29 b.35.1.2,c.2.1.1 100794,100795 2h5oA 234 85.71 2icuA 229 85.91 2nooA 502 86.98 2d1wA 638 87.79 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2bceA 585 87.95 c.69.1.1 34625 1ogiA 303 88.11 b.43.4.2,c.25.1.1 92914,92915 4ubpB 126 89.64 b.85.3.1 28345