# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 2.38e-34 b.30.5.4 98930 1nszA 347 2.46e-34 b.30.5.4 80724 1lurA 339 1.07e-33 b.30.5.4 84717 1ygaA 342 1.99e-31 1z45A 699 3.20e-31 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 9.94e-31 2htaA 309 1.49e-27 1jovA 270 1.38e-26 b.30.5.7 84192 3bs6A 280 0.000826 3blcA 330 0.004842 1v7wA 807 0.2250 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.7212 1lf6A 684 0.8389 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 1.493 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2piaA 321 1.879 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1go2A 304 4.025 b.43.4.2,c.25.1.1 76243,76244 1qfmA 710 4.723 b.69.7.1,c.69.1.4 27673,34641 2bcjB 340 4.980 b.69.4.1 128289 1y4wA 518 6.364 b.29.1.19,b.67.2.3 116470,116471 1a8d 452 7.140 1w34A 304 8.841 b.43.4.2,c.25.1.1 120620,120621 2r5vA 357 9.378 3bpoC 314 9.741 1lmiA 131 10.16 b.1.19.1 78098 1a8pA 258 10.47 b.43.4.2,c.25.1.1 25654,31544 2pbiB 354 10.98 2a46A 238 13.09 1h2wA 710 13.20 b.69.7.1,c.69.1.4 76596,76597 2bw4A 340 13.42 b.6.1.3,b.6.1.3 129320,129321 2ib5A 233 13.83 1r8nA 185 14.02 b.42.4.1 104851 1cd9B 215 16.47 b.1.2.1,b.1.2.1 22041,22042 1qxmA 300 16.65 b.42.2.1,b.42.2.1 96533,96534 1ytqA 204 19.91 b.11.1.1,b.11.1.1 124012,124013 1sz6B 263 19.91 b.42.2.1,b.42.2.1 112172,112173 2bgiA 272 20.09 1oz2A 331 20.79 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2gc7A 386 23.99 b.69.2.1 134954 2b1xA 470 26.45 b.33.1.2,d.129.3.3 127675,127676 2ag4A 164 27.26 b.95.1.1 126717 1qwrA 319 28.94 b.82.1.3 96491 2g8mA 264 30.16 1p4tA 155 30.35 f.4.1.1 87779 1qi9A 556 30.72 a.111.1.2 19053 1mppA 361 30.99 b.50.1.2 26856 1uliA 460 31.18 b.33.1.2,d.129.3.3 107921,107922 2gw3A 225 31.36 1xv2A 237 32.23 d.290.1.1 116076 2b5iB 214 33.32 b.1.2.1,b.1.2.1 127896,127897 1bquA 215 34.73 b.1.2.1,b.1.2.1 22066,22067 1so9A 164 35.75 b.146.1.1 105842 1j71A 334 35.94 b.50.1.2 62669 1reoA 486 36.51 c.3.1.2,d.16.1.5 97325,97326 2bmoA 447 36.68 b.33.1.2,d.129.3.3 128804,128805 2i7rA 118 37.52 d.32.1.2 137102 1or0B 528 38.21 2d1zA 436 38.78 1x8mA 288 39.36 b.82.1.13 109516 1jmxB 349 39.71 b.69.2.2 66906 2calA 154 39.95 2ag9A 164 40.36 2eixA 243 40.62 3bxtA 257 40.94 2cn3A 737 42.27 2vadA 223 42.36 1qfjA 232 42.81 b.43.4.2,c.25.1.1 25655,31545 1m2tB 263 44.63 b.42.2.1,b.42.2.1 84762,84763 1tyvA 554 44.90 b.80.1.6 28038 4ubpB 126 45.40 b.85.3.1 28345 2bbkH 355 45.44 b.69.2.1 27634 1a0rB 340 47.20 b.69.4.1 27658 1sefA 274 48.01 b.82.1.11 105452 2vgnA 386 48.72 1hs6A 611 50.90 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1ogiA 303 51.83 b.43.4.2,c.25.1.1 92914,92915 1nt0A 286 52.27 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1qg3A 195 53.37 b.1.2.1,b.1.2.1 21993,21994 1y43B 173 55.89 1h54A 754 60.01 a.102.1.4,b.30.5.3 60634,60635 1ygsA 234 60.35 b.26.1.1 23907 2i8tA 167 60.40 1y1oA 203 61.58 c.52.1.28 116345 1bjmA 216 61.93 b.1.1.1,b.1.1.2 20524,21460 1m1zA 513 63.99 c.26.2.1,d.153.1.1 78457,78458 1ygeA 839 66.02 a.119.1.1,b.12.1.1 19234,23634 2cy5A 140 68.49 b.55.1.2 131018 2cqsA 842 69.81 2aaiB 262 70.37 b.42.2.1,b.42.2.1 25561,25562 1kgcE 242 70.74 b.1.1.1,b.1.1.2 77386,77387 1hvyA 288 72.10 d.117.1.1 41049 2qcvA 332 72.69 2dddA 225 73.50 2b9wA 424 73.52 2h14A 317 75.50 1sfp 114 76.09 1eaxA 241 76.31 b.47.1.2 64889 2ivwA 113 76.57 3ceyA 474 77.78 1rznA 205 78.17 c.52.1.28 111981 1vkdA 338 83.18 b.67.2.4 108644 3b7fA 394 84.75 2hqsA 415 85.68 b.68.4.1,c.51.2.1 136662,136663 1o7nA 449 86.29 b.33.1.2,d.129.3.3 81162,81163 2c9jA 223 86.79 2vj8A 611 87.59 2g8oA 264 88.40 d.117.1.1 134779