# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nszA 347 1.49e-35 b.30.5.4 80724 1snzA 344 1.52e-35 b.30.5.4 98930 1lurA 339 8.90e-35 b.30.5.4 84717 1ygaA 342 5.61e-33 1z45A 699 1.32e-32 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 9.38e-32 2htaA 309 1.27e-28 1jovA 270 2.50e-27 b.30.5.7 84192 3bs6A 280 0.004000 3blcA 330 0.01219 2rdyA 803 0.4334 1v7wA 807 0.8586 a.102.1.4,b.30.5.3 108411,108412 1lf6A 684 1.557 a.102.1.5,b.30.5.5 77918,77919 1qfmA 710 3.095 b.69.7.1,c.69.1.4 27673,34641 2r5vA 357 3.178 1vclA 432 3.293 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3bpoC 314 3.426 2piaA 321 4.679 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2g8mA 264 5.974 1a8d 452 6.092 1h2wA 710 8.166 b.69.7.1,c.69.1.4 76596,76597 1qi9A 556 9.97 a.111.1.2 19053 1go2A 304 10.20 b.43.4.2,c.25.1.1 76243,76244 2bcjB 340 10.74 b.69.4.1 128289 1r8nA 185 12.88 b.42.4.1 104851 1evfA 264 13.61 d.117.1.1 40932 2bw4A 340 13.93 b.6.1.3,b.6.1.3 129320,129321 2g8oA 264 14.41 d.117.1.1 134779 1lmiA 131 14.67 b.1.19.1 78098 1tyvA 554 14.92 b.80.1.6 28038 1x8mA 288 17.72 b.82.1.13 109516 1y4wA 518 19.65 b.29.1.19,b.67.2.3 116470,116471 1wleA 501 19.96 1zvdA 380 20.05 1oz2A 331 20.55 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1reoA 486 20.57 c.3.1.2,d.16.1.5 97325,97326 1qwrA 319 21.14 b.82.1.3 96491 1qqqA 264 21.98 d.117.1.1 40931 1hvyA 288 22.83 d.117.1.1 41049 1a8pA 258 24.75 b.43.4.2,c.25.1.1 25654,31544 1so9A 164 26.17 b.146.1.1 105842 1ygeA 839 26.64 a.119.1.1,b.12.1.1 19234,23634 1w34A 304 27.75 b.43.4.2,c.25.1.1 120620,120621 1bkpA 278 27.86 d.117.1.1 41029 2ag4A 164 28.00 b.95.1.1 126717 2yy8A 201 29.12 1sznA 417 30.57 b.71.1.1,c.1.8.1 106162,106163 2bbkH 355 32.03 b.69.2.1 27634 1bquA 215 34.85 b.1.2.1,b.1.2.1 22066,22067 4ubpB 126 34.88 b.85.3.1 28345 1cd9B 215 35.45 b.1.2.1,b.1.2.1 22041,22042 1gppA 237 37.46 b.86.1.2 76262 1ev5A 264 38.24 d.117.1.1 40935 2id0A 644 38.64 1y1oA 203 39.89 c.52.1.28 116345 1j71A 334 40.00 b.50.1.2 62669 2pbiB 354 40.05 2i7rA 118 43.44 d.32.1.2 137102 1vj1A 363 46.65 b.35.1.2,c.2.1.1 100794,100795 2a46A 238 47.73 2calA 154 50.26 1p4tA 155 50.66 f.4.1.1 87779 2ag9A 164 50.86 1ytqA 204 51.97 b.11.1.1,b.11.1.1 124012,124013 1uliA 460 52.25 b.33.1.2,d.129.3.3 107921,107922 2ib5A 233 52.36 2bmfA 451 52.81 c.37.1.14,c.37.1.14 128791,128792 1nekA 588 53.63 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2b5iB 214 54.85 b.1.2.1,b.1.2.1 127896,127897 2bgiA 272 55.50 1sb2B 129 60.06 d.169.1.1 118928 2icuA 229 61.64 2eixA 243 66.88 1eaxA 241 67.24 b.47.1.2 64889 1chuA 540 69.95 a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2vgnA 386 72.52 3bneA 839 72.67 1w1oA 534 73.86 d.58.32.4,d.145.1.1 109071,109072 1xv2A 237 75.08 d.290.1.1 116076 2cqsA 842 79.31 1nkgA 508 84.08 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1sefA 274 84.18 b.82.1.11 105452 2hlsA 243 84.19 2iihA 157 86.26 1ejxB 101 87.18 b.85.3.1 83183 2aqpA 164 89.27