# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 7.05e-36 b.30.5.4 98930 1nszA 347 1.64e-35 b.30.5.4 80724 1lurA 339 2.98e-35 b.30.5.4 84717 1z45A 699 3.03e-33 b.30.5.4,c.2.1.2 124427,124428 1ygaA 342 5.48e-33 2cirA 297 2.95e-32 2htaA 309 3.78e-29 1jovA 270 8.70e-28 b.30.5.7 84192 3bs6A 280 0.003063 3blcA 330 0.03186 1v7wA 807 0.4114 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.5244 1lf6A 684 1.202 a.102.1.5,b.30.5.5 77918,77919 1h2wA 710 2.135 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 2.825 b.69.7.1,c.69.1.4 27673,34641 1vclA 432 3.270 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2r5vA 357 4.660 2piaA 321 5.581 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2g8mA 264 6.908 1x8mA 288 7.096 b.82.1.13 109516 1y4wA 518 8.364 b.29.1.19,b.67.2.3 116470,116471 1evfA 264 8.572 d.117.1.1 40932 1qwrA 319 10.75 b.82.1.3 96491 1qi9A 556 10.77 a.111.1.2 19053 2bw4A 340 10.78 b.6.1.3,b.6.1.3 129320,129321 1a8d 452 11.75 1go2A 304 12.21 b.43.4.2,c.25.1.1 76243,76244 1lmiA 131 12.80 b.1.19.1 78098 1so9A 164 12.86 b.146.1.1 105842 1qqqA 264 14.80 d.117.1.1 40931 2g8oA 264 17.84 d.117.1.1 134779 2i7rA 118 18.37 d.32.1.2 137102 1r8nA 185 19.06 b.42.4.1 104851 2bcjB 340 19.39 b.69.4.1 128289 1nkgA 508 19.81 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 4ubpB 126 20.47 b.85.3.1 28345 1a8pA 258 22.03 b.43.4.2,c.25.1.1 25654,31544 2a46A 238 22.50 1bkpA 278 24.64 d.117.1.1 41029 2cqsA 842 25.64 2bgiA 272 26.73 1reoA 486 29.17 c.3.1.2,d.16.1.5 97325,97326 1ev5A 264 29.90 d.117.1.1 40935 2ib5A 233 32.81 1qxmA 300 33.24 b.42.2.1,b.42.2.1 96533,96534 1w34A 304 33.61 b.43.4.2,c.25.1.1 120620,120621 2pbiB 354 34.16 1y1oA 203 36.10 c.52.1.28 116345 2b5iB 214 36.24 b.1.2.1,b.1.2.1 127896,127897 2yy8A 201 36.52 2calA 154 36.82 1cd9B 215 37.85 b.1.2.1,b.1.2.1 22041,22042 2vgnA 386 38.17 2vadA 223 39.31 1h54A 754 39.71 a.102.1.4,b.30.5.3 60634,60635 1bquA 215 39.97 b.1.2.1,b.1.2.1 22066,22067 2icuA 229 42.16 1hvyA 288 42.60 d.117.1.1 41049 1rznA 205 42.78 c.52.1.28 111981 1gppA 237 44.20 b.86.1.2 76262 2gw3A 225 45.86 2eixA 243 46.19 2gc7A 386 46.22 b.69.2.1 134954 1n3jA 119 51.30 b.85.7.2 79963 2ch4W 151 52.64 b.40.7.1 130451 2ivwA 113 53.98 1ejxB 101 54.14 b.85.3.1 83183 1oz2A 331 56.95 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1zvdA 380 57.81 1zp7A 206 62.32 1mppA 361 63.05 b.50.1.2 26856 3bxtA 257 63.40 1ypvA 313 63.70 1yewA 382 63.96 3b7fA 394 64.08 1a65A 504 66.30 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 3bpoC 314 66.63 2eabA 899 72.24 2d1zA 436 74.43 1uliA 460 74.54 b.33.1.2,d.129.3.3 107921,107922 2ie2A 222 74.84 1p4tA 155 75.13 f.4.1.1 87779 1ygeA 839 75.24 a.119.1.1,b.12.1.1 19234,23634 1or0B 528 77.01 1ytqA 204 77.02 b.11.1.1,b.11.1.1 124012,124013 1zdyA 307 77.09 d.313.1.1 124961 1sb2B 129 77.42 d.169.1.1 118928 2ejoA 223 77.84 2i51A 195 82.04 2ag4A 164 82.97 b.95.1.1 126717 1j71A 334 83.05 b.50.1.2 62669 2bmoA 447 84.42 b.33.1.2,d.129.3.3 128804,128805 2icrA 237 84.70 1xv2A 237 86.19 d.290.1.1 116076 1jmxB 349 86.24 b.69.2.2 66906 2h9fA 396 87.31 2dddA 225 87.90 1tfzA 424 89.23 d.32.1.3,d.32.1.3 106886,106887 3ct9A 356 89.33