# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 8.64e-35 b.30.5.4 98930 1nszA 347 1.15e-34 b.30.5.4 80724 1lurA 339 3.74e-34 b.30.5.4 84717 1ygaA 342 4.39e-32 1z45A 699 5.87e-32 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 5.68e-31 2htaA 309 2.12e-28 1jovA 270 9.76e-27 b.30.5.7 84192 3bs6A 280 0.002498 3blcA 330 0.01206 1v7wA 807 0.4870 a.102.1.4,b.30.5.3 108411,108412 2rdyA 803 0.9846 1lf6A 684 2.049 a.102.1.5,b.30.5.5 77918,77919 1vclA 432 3.106 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1h2wA 710 3.792 b.69.7.1,c.69.1.4 76596,76597 2piaA 321 4.189 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1x8mA 288 4.320 b.82.1.13 109516 1a8d 452 5.673 1qi9A 556 5.685 a.111.1.2 19053 2r5vA 357 6.598 2g8mA 264 7.007 1lmiA 131 7.027 b.1.19.1 78098 1qxmA 300 7.773 b.42.2.1,b.42.2.1 96533,96534 2bw4A 340 7.960 b.6.1.3,b.6.1.3 129320,129321 1qfmA 710 10.17 b.69.7.1,c.69.1.4 27673,34641 1go2A 304 10.95 b.43.4.2,c.25.1.1 76243,76244 1so9A 164 11.33 b.146.1.1 105842 1qwrA 319 11.51 b.82.1.3 96491 1tyvA 554 14.26 b.80.1.6 28038 2bcjB 340 15.53 b.69.4.1 128289 1evfA 264 16.35 d.117.1.1 40932 3bpoC 314 16.60 2a46A 238 18.65 2g8oA 264 18.93 d.117.1.1 134779 2pbiB 354 20.21 2yy8A 201 21.32 1hvyA 288 21.91 d.117.1.1 41049 1qqqA 264 22.89 d.117.1.1 40931 1reoA 486 23.30 c.3.1.2,d.16.1.5 97325,97326 1a8pA 258 23.47 b.43.4.2,c.25.1.1 25654,31544 2i7rA 118 23.99 d.32.1.2 137102 1y4wA 518 25.02 b.29.1.19,b.67.2.3 116470,116471 4ubpB 126 29.60 b.85.3.1 28345 2ch4W 151 29.94 b.40.7.1 130451 2ib5A 233 31.45 2ag4A 164 32.23 b.95.1.1 126717 2b5iB 214 32.45 b.1.2.1,b.1.2.1 127896,127897 1bkpA 278 34.47 d.117.1.1 41029 1gppA 237 35.95 b.86.1.2 76262 1cd9B 215 36.94 b.1.2.1,b.1.2.1 22041,22042 1bquA 215 37.08 b.1.2.1,b.1.2.1 22066,22067 2cqsA 842 38.12 1mppA 361 38.14 b.50.1.2 26856 2gc7A 386 38.29 b.69.2.1 134954 1w34A 304 38.60 b.43.4.2,c.25.1.1 120620,120621 1exg 110 39.45 1ev5A 264 40.31 d.117.1.1 40935 2bbkH 355 41.72 b.69.2.1 27634 2gw3A 225 42.87 2bmoA 447 45.76 b.33.1.2,d.129.3.3 128804,128805 1ytqA 204 46.42 b.11.1.1,b.11.1.1 124012,124013 1h54A 754 47.96 a.102.1.4,b.30.5.3 60634,60635 1y1oA 203 49.82 c.52.1.28 116345 2vadA 223 51.10 1xv2A 237 51.21 d.290.1.1 116076 1zvdA 380 52.82 2h0vA 338 53.77 1tfzA 424 54.07 d.32.1.3,d.32.1.3 106886,106887 2eixA 243 56.66 1r8nA 185 56.73 b.42.4.1 104851 2vgnA 386 57.58 1y43B 173 62.88 2calA 154 63.19 1ejxB 101 64.77 b.85.3.1 83183 1rznA 205 65.18 c.52.1.28 111981 2ivwA 113 65.33 1uliA 460 66.53 b.33.1.2,d.129.3.3 107921,107922 1ypvA 313 67.29 1sefA 274 68.27 b.82.1.11 105452 2d1zA 436 68.67 1ygsA 234 68.96 b.26.1.1 23907 2qcvA 332 71.49 2i51A 195 73.00 2vnuD 760 73.85 1yewA 382 75.37 1sb2B 129 76.88 d.169.1.1 118928 1ogiA 303 77.77 b.43.4.2,c.25.1.1 92914,92915 2eabA 899 77.89 2hlsA 243 80.36 1j71A 334 82.73 b.50.1.2 62669 1sfp 114 82.94 1jmxB 349 83.04 b.69.2.2 66906 1wleA 501 85.96 1ygeA 839 87.49 a.119.1.1,b.12.1.1 19234,23634 1nkgA 508 89.65 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1zdsA 336 89.73 b.6.1.3,b.6.1.3 124952,124953 2id0A 644 89.92