# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lurA	339	7.08e-32	b.30.5.4	84717
1nszA	347	9.49e-32	b.30.5.4	80724
1snzA	344	8.24e-31	b.30.5.4	98930
1ygaA	342	3.40e-29		
1z45A	699	2.69e-27	b.30.5.4,c.2.1.2	124427,124428
2cirA	297	1.05e-25		
2htaA	309	5.49e-24		
1jovA	270	1.82e-21	b.30.5.7	84192
3bs6A	280	0.003567		
3blcA	330	0.05086		
2g8mA	264	4.689		
1hvyA	288	6.103	d.117.1.1	41049
2g8oA	264	7.337	d.117.1.1	134779
1bkpA	278	8.576	d.117.1.1	41029
1e4mM	501	8.625	c.1.8.4	59226
2r5vA	357	10.41		
1dp0A	1023	11.29	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
1qqqA	264	12.31	d.117.1.1	40931
2cw2A	226	13.07		
1evfA	264	13.97	d.117.1.1	40932
1ev5A	264	17.75	d.117.1.1	40935
2nybA	192	18.02	a.2.11.1,d.44.1.1	138804,138805
1tfzA	424	19.58	d.32.1.3,d.32.1.3	106886,106887
1my6A	199	23.13	a.2.11.1,d.44.1.1	85232,85233
1x8mA	288	24.21	b.82.1.13	109516
1ypvA	313	28.55		
2gojA	197	28.65		
2d73A	738	43.71		
1dkuA	317	45.78	c.61.1.2,c.61.1.2	34118,34119
2rftA	344	47.15		
1a8pA	258	47.38	b.43.4.2,c.25.1.1	25654,31544
2infA	359	51.04		
1ex0A	731	51.10	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	90465,90466,90467,90468
2r58A	265	52.26		
2bokA	241	52.31	b.47.1.2	128916
1oz2A	331	53.74	b.34.9.3,b.34.9.3,b.34.9.3	93781,93782,93783
2bvrH	252	54.84		
1iscA	192	55.61	a.2.11.1,d.44.1.1	15733,38726
2p3uB	233	56.99		
2aytA	237	59.93		
2p0kA	212	63.35		
1gnxA	479	63.46	c.1.8.4	76241
2cw3A	280	65.29		
1yvvA	336	67.64		
1uerA	191	71.56	a.2.11.1,d.44.1.1	107790,107791
2hlsA	243	73.11		
1yewA	382	74.57		
2i51A	195	77.26		
1bio	228	77.55		
1odzA	386	81.56	c.1.8.3	86889
1qxmA	300	81.56	b.42.2.1,b.42.2.1	96533,96534
1rh9A	373	82.19	c.1.8.3	118773
2bneA	241	82.82	c.73.1.3	128824
2i9iA	254	85.20		
1rfmA	344	85.65	c.122.1.1	97385
3ceyA	474	88.31		
2calA	154	88.71		
2ag4A	164	89.82	b.95.1.1	126717
2gp5A	349	89.92