# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lurA 339 9.57e-38 b.30.5.4 84717 1nszA 347 1.03e-37 b.30.5.4 80724 1snzA 344 2.91e-37 b.30.5.4 98930 1ygaA 342 4.09e-35 1z45A 699 1.65e-34 b.30.5.4,c.2.1.2 124427,124428 2cirA 297 2.11e-32 2htaA 309 2.77e-30 1jovA 270 2.07e-26 b.30.5.7 84192 3bs6A 280 6.16e-05 3blcA 330 0.001702 2g8mA 264 4.127 1v7wA 807 5.767 a.102.1.4,b.30.5.3 108411,108412 2gc7A 386 6.703 b.69.2.1 134954 2rdyA 803 7.961 1bkpA 278 8.589 d.117.1.1 41029 2r5vA 357 9.886 1vkdA 338 9.918 b.67.2.4 108644 2g8oA 264 10.73 d.117.1.1 134779 1avaC 181 14.17 b.42.4.1 25604 3ceyA 474 14.77 1hvyA 288 15.08 d.117.1.1 41049 1r8nA 185 17.23 b.42.4.1 104851 1lf6A 684 17.27 a.102.1.5,b.30.5.5 77918,77919 2piaA 321 20.49 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1gqnA 252 20.74 c.1.10.1 90514 1wg8A 285 21.09 a.60.13.1,c.66.1.23 114605,114606 1qfeA 252 21.34 c.1.10.1 29167 1evfA 264 21.73 d.117.1.1 40932 1uliA 460 22.78 b.33.1.2,d.129.3.3 107921,107922 2ayh 214 23.96 2bw4A 340 23.96 b.6.1.3,b.6.1.3 129320,129321 1qqqA 264 25.00 d.117.1.1 40931 2gsaA 432 25.32 c.67.1.4 34446 1a8pA 258 26.11 b.43.4.2,c.25.1.1 25654,31544 1ev5A 264 27.67 d.117.1.1 40935 1sefA 274 30.01 b.82.1.11 105452 1oaoC 729 34.34 e.26.1.3 86746 1sflA 238 38.01 c.1.10.1 112077 2aqqA 164 38.56 1b3bA 415 46.06 c.2.1.7,c.58.1.1 30244,33892 1t0bA 252 46.35 c.23.16.6 106199 3bmzA 199 47.02 1ytqA 204 47.36 b.11.1.1,b.11.1.1 124012,124013 1sznA 417 48.29 b.71.1.1,c.1.8.1 106162,106163 1qo7A 394 50.78 c.69.1.11 34697 1exg 110 54.06 2r58A 265 55.97 2aqpA 164 58.13 3ct9A 356 58.46 2d2jA 329 60.21 c.1.9.3 131175 2bneA 241 60.59 c.73.1.3 128824 2icuA 229 61.02 1arbA 268 61.12 b.47.1.1 25766 2d51A 406 61.84 1mpxA 615 62.47 b.18.1.13,c.69.1.21 85041,85042 1ejxB 101 62.80 b.85.3.1 83183 2oczA 231 67.53 1vypX 364 69.67 c.1.4.1 108905 3bh0A 315 69.78 1y4wA 518 70.25 b.29.1.19,b.67.2.3 116470,116471 1vkhA 273 72.83 c.69.1.32 108662 1wbaA 175 74.75 b.42.4.1 25591 2hcrA 326 75.52 2rftA 344 76.64 1nhsA 447 78.04 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1kw3B 292 78.45 d.32.1.3,d.32.1.3 77549,77550 4ubpB 126 79.48 b.85.3.1 28345 1rh9A 373 79.52 c.1.8.3 118773 1oz2A 331 79.68 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1w34A 304 81.52 b.43.4.2,c.25.1.1 120620,120621 1u5hA 273 82.25 c.1.12.5 113037 1td5A 202 82.50 d.110.2.2 106767 2h8zA 359 83.14 2p0kA 212 83.17 1g43A 160 83.71 b.2.2.2 22392 1w6gA 646 84.40 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1sfjA 238 85.63 c.1.10.1 112075 1ypvA 313 85.72 1wleA 501 85.79 1dkuA 317 86.45 c.61.1.2,c.61.1.2 34118,34119 1ep3B 262 88.37 b.43.4.2,c.25.1.3 25664,31554 2db3A 434 88.67 1q1gA 276 88.82 c.56.2.1 95574 1sffA 426 89.86 c.67.1.4 105482