# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1snzA 344 2.26e-18 b.30.5.4 98930 1nszA 347 5.16e-18 b.30.5.4 80724 1lurA 339 6.44e-18 b.30.5.4 84717 1ygaA 342 4.68e-17 1z45A 699 4.05e-16 b.30.5.4,c.2.1.2 124427,124428 2htaA 309 1.30e-12 2cirA 297 2.19e-12 1jovA 270 4.85e-11 b.30.5.7 84192 3blcA 330 0.007397 3bs6A 280 0.009267 1h54A 754 1.704 a.102.1.4,b.30.5.3 60634,60635 1a2vA 655 2.037 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 3bgaA 1010 2.235 2oqeA 660 2.250 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2d73A 738 2.297 2piaA 321 2.471 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2be1A 339 3.256 3ladA 476 5.100 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2pia 321 5.403 2g23A 612 6.442 1snrA 341 7.172 b.6.1.3,b.6.1.3 105823,105824 1e3aB 560 9.287 1v7wA 807 9.344 a.102.1.4,b.30.5.3 108411,108412 2j58A 359 10.31 1oacA 727 10.37 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3grs 478 10.52 1gk9B 557 11.96 1n9eA 787 12.31 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2dvyA 226 14.11 1w7cA 747 14.13 2b1xB 172 14.18 d.17.4.4 127677 1uh4A 637 14.95 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1wzoA 246 18.97 1qg3A 195 19.25 b.1.2.1,b.1.2.1 21993,21994 1pbyB 337 20.55 b.69.2.2 94422 1yiqA 689 20.70 2eq6A 464 20.79 1zdsA 336 20.94 b.6.1.3,b.6.1.3 124952,124953 1dp0A 1023 23.62 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1bquA 215 23.77 b.1.2.1,b.1.2.1 22066,22067 2glfA 450 24.13 2hrgA 496 24.40 1qdlB 195 25.48 c.23.16.1 31437 1jz8A 1023 25.57 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1zk7A 467 25.65 3grsA 478 27.06 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2r9zA 463 27.68 2ppeA 343 28.94 1nkgA 508 30.38 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1n67A 359 32.69 b.2.3.4,b.2.3.4 85354,85355 1o7dD 282 33.19 1mo9A 523 33.26 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2vfrA 422 33.64 1of8A 370 34.36 c.1.10.4 92819 1lmiA 131 34.41 b.1.19.1 78098 2qa1A 500 34.61 2vj8A 611 35.41 3bpoC 314 35.46 2exrA 524 35.91 1j9qA 341 36.76 b.6.1.3,b.6.1.3 62765,62766 1ksiA 642 37.77 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1tu5A 746 37.80 1wl8A 189 37.90 c.23.16.1 120997 1zpuA 534 39.10 1n26A 325 39.58 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3c26A 266 40.33 1yewA 382 41.29 1ema 236 43.05 1or0B 528 44.20 2b4hA 254 44.79 1cqqA 180 45.86 b.47.1.4 26422 1kv7A 488 46.12 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1zmdA 474 46.14 3c96A 415 46.91 2vouA 397 47.70 1acc 735 47.83 2yquA 455 47.93 2qfmA 364 49.24 1ji1A 637 50.19 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1fm2B 520 51.35 2rh7A 239 51.74 1ndh 272 55.85 1xs1A 193 56.27 b.85.4.1 115892 2bh1A 250 56.46 c.55.1.11,c.55.1.11 128506,128507 2bw4A 340 58.92 b.6.1.3,b.6.1.3 129320,129321 1pbe 394 59.06 1kypA 237 60.22 d.22.1.1 73280 1a8pA 258 60.25 b.43.4.2,c.25.1.1 25654,31544 1i7qB 193 61.70 c.23.16.1 61902 1nt0A 286 61.77 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1z02A 446 62.49 2cqsA 842 62.63 1em2A 229 65.49 d.129.3.2 41321 1cfb 205 66.85 1fnoA 417 68.40 d.58.19.1,c.56.5.4 70145,75841 1vqqA 646 68.41 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1bio 228 69.38 1gesA 450 69.66 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 3choA 610 69.82 2bsfA 176 69.97 1lp3A 519 70.84 b.121.5.2 74169 1vdeA 454 72.86 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1xx9A 238 74.12 b.47.1.2 116149 1l1nA 183 74.41 b.47.1.4 73476 3bc9A 599 74.82 2a9dA 372 74.83 b.1.18.6,d.176.1.1 126431,126432 2ipiA 521 75.45 1v0aA 178 75.59 b.18.1.30 119815 1zxqA 192 77.81 b.1.1.3,b.1.1.4 21657,21693 1lvlA 458 78.13 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1vjhA 122 79.26 d.129.3.1 100811 2culA 232 79.67 c.3.1.7 130813 1ek8A 185 79.89 d.67.3.1 59444 1rjoA 646 80.04 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 3b34A 891 80.36 1gg1A 350 80.37 c.1.10.4 29187 2h5uA 499 81.41 1zy9A 564 83.73 b.30.5.11,c.1.8.13 125813,125814 2bz6H 254 84.57 b.47.1.2 129552 1cfbA 205 86.89 b.1.2.1,b.1.2.1 21991,21992 1xyiA 66 88.63 1te5A 257 89.76 d.153.1.1 106795