Best Alignments for T0448

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1ivnA/T0448-1ivnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ivnA/T0448-1ivnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0234e-144.01e-87 c.23.10.5
3bzwA/T0448-3bzwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bzwA/T0448-3bzwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1264e-133.74e-77
2q0sA/T0448-2q0sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2q0sA/T0448-2q0sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8463e-122.58e-87
2hsjA/T0448-2hsjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hsjA/T0448-2hsjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0858e-126.28e-66
2vptA/T0448-2vptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vptA/T0448-2vptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2149e-113.95e-68
1k7cA/T0448-1k7cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k7cA/T0448-1k7cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5864e-111.07e-71 c.23.10.4
1es9A/T0448-1es9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1es9A/T0448-1es9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0416e-113.11e-65 1wab c.23.10.3
1vjgA/T0448-1vjgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjgA/T0448-1vjgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1201e-111.39e-74 c.23.10.6
2o14A/T0448-2o14A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2o14A/T0448-2o14A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1443e-112.29e-74
2q0qA/T0448-2q0qA-t04-global-adpstyle1.a2m 2q0qA/T0448-2q0qA-t04-global-adpstyle1.al 5.0512e-068.06e-35

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001