PFRMAT SS TARGET T0448 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0448.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 124 METHOD MODEL 1 M C 0.736 I C 0.535 A C 0.461 M C 0.342 I E 0.333 V E 0.404 K E 0.333 G E 0.347 G H 0.351 L H 0.462 A H 0.589 M H 0.666 A H 0.650 I H 0.598 S H 0.515 N H 0.383 G T 0.360 H T 0.447 V T 0.587 S T 0.578 F T 0.487 K C 0.379 R E 0.875 P E 0.974 A E 0.985 W E 0.972 L E 0.810 G T 0.414 D T 0.616 S T 0.568 I T 0.429 T T 0.361 A T 0.437 N T 0.533 N T 0.498 G T 0.463 L T 0.449 A T 0.511 T T 0.539 V T 0.442 H C 0.343 Y C 0.404 H H 0.802 D H 0.856 I H 0.848 L H 0.909 A H 0.933 A H 0.903 D H 0.854 W H 0.707 D H 0.374 V C 0.660 E C 0.471 R E 0.695 S E 0.907 D E 0.908 N E 0.842 L E 0.615 G E 0.430 I T 0.421 S T 0.431 G T 0.405 S T 0.318 T H 0.361 I H 0.525 G H 0.500 S H 0.525 R H 0.579 Y H 0.559 D H 0.546 A H 0.579 M H 0.677 A H 0.667 V H 0.622 R H 0.572 Y H 0.560 Q H 0.525 A H 0.471 I H 0.401 P T 0.369 E T 0.387 D T 0.591 A T 0.605 D T 0.395 F E 0.981 I E 0.996 A E 0.997 V E 0.988 F E 0.910 G E 0.505 G C 0.496 V C 0.491 N C 0.342 D T 0.466 Y T 0.471 G T 0.494 R T 0.436 D C 0.395 Q C 0.344 P T 0.408 L T 0.516 G T 0.576 Q T 0.570 Y T 0.604 G T 0.592 D T 0.511 C C 0.426 D C 0.664 M H 0.855 T H 0.876 T H 0.884 F H 0.958 Y H 0.984 G H 0.986 A H 0.990 L H 0.997 M H 0.999 M H 0.998 L H 0.998 L H 0.997 T H 0.995 G H 0.990 L H 0.976 Q H 0.917 T H 0.761 N H 0.430 W C 0.606 P C 0.567 T C 0.516 V E 0.590 P E 0.887 K E 0.964 L E 0.963 F E 0.949 I E 0.814 S E 0.459 A C 0.363 I T 0.390 H T 0.410 I C 0.413 G C 0.421 S T 0.428 D T 0.389 F T 0.366 G C 0.360 G C 0.391 S T 0.372 F T 0.367 S T 0.406 A H 0.338 V H 0.455 T H 0.522 N H 0.549 G H 0.642 L H 0.780 G H 0.784 Y H 0.861 R H 0.871 Q H 0.918 S H 0.926 D H 0.939 Y H 0.969 E H 0.983 A H 0.985 A H 0.990 I H 0.989 A H 0.981 Q H 0.985 M H 0.986 T H 0.964 A H 0.920 D H 0.827 Y H 0.501 G C 0.914 V C 0.867 P C 0.795 H E 0.718 L E 0.802 S E 0.631 L C 0.246 Y C 0.288 R H 0.399 D H 0.499 A H 0.555 G H 0.475 M H 0.514 T H 0.378 F H 0.388 A T 0.327 I T 0.334 P H 0.413 A H 0.422 Q H 0.467 A H 0.405 A H 0.329 I H 0.327 Y C 0.319 S T 0.533 V T 0.688 D T 0.735 T T 0.673 L T 0.371 H C 0.389 P C 0.504 N C 0.704 N H 0.939 A H 0.988 G H 0.993 H H 0.997 R H 0.998 V H 0.998 I H 0.998 A H 0.998 R H 0.997 K H 0.996 L H 0.994 Q H 0.992 S H 0.986 F H 0.990 L H 0.985 D H 0.956 S H 0.834 H H 0.480 F H 0.357 L T 0.395 E T 0.401 H T 0.456 H T 0.485 H T 0.454 H C 0.406 H C 0.613 H C 0.858 END