PFRMAT SS TARGET T0448 AUTHOR SAM-T02-server METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0448.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 124 METHOD MODEL 1 M C 0.997 I C 0.413 A E 0.426 M E 0.420 I E 0.411 V E 0.450 K E 0.392 G H 0.411 G H 0.497 L H 0.583 A H 0.573 M H 0.598 A H 0.543 I H 0.475 S H 0.452 N H 0.300 G C 0.391 H C 0.302 V C 0.307 S C 0.337 F C 0.373 K C 0.524 R E 0.702 P E 0.933 A E 0.970 W E 0.948 L E 0.790 G E 0.481 D S 0.348 S C 0.403 I E 0.269 T E 0.220 A T 0.307 N T 0.342 N T 0.343 G T 0.417 L C 0.476 A C 0.400 T S 0.295 V C 0.363 H C 0.389 Y C 0.458 H H 0.724 D H 0.906 I H 0.923 L H 0.938 A H 0.937 A H 0.902 D H 0.818 W H 0.615 D T 0.393 V T 0.398 E C 0.636 R E 0.678 S E 0.899 D E 0.938 N E 0.893 L E 0.668 G E 0.473 I C 0.321 S C 0.329 G S 0.257 S H 0.397 T H 0.546 I H 0.721 G H 0.675 S H 0.673 R H 0.667 Y H 0.681 D H 0.669 A H 0.638 M H 0.530 A H 0.475 V C 0.470 R H 0.438 Y H 0.428 Q H 0.447 A H 0.434 I H 0.383 P T 0.248 E S 0.276 D C 0.488 A C 0.847 D S 0.642 F E 0.989 I E 0.999 A E 0.999 V E 0.995 F E 0.905 G E 0.498 G C 0.489 V C 0.323 N C 0.266 D C 0.285 Y T 0.367 G T 0.406 R T 0.317 D C 0.366 Q C 0.518 P C 0.562 L T 0.338 G T 0.366 Q C 0.296 Y C 0.337 G S 0.360 D C 0.405 C C 0.478 D C 0.762 M H 0.876 T H 0.868 T H 0.867 F H 0.956 Y H 0.975 G H 0.980 A H 0.986 L H 0.994 M H 0.995 M H 0.996 L H 0.995 L H 0.994 T H 0.988 G H 0.969 L H 0.951 Q H 0.894 T H 0.665 N T 0.394 W C 0.574 P C 0.651 T C 0.495 V E 0.527 P E 0.896 K E 0.972 L E 0.973 F E 0.944 I E 0.804 S E 0.480 A C 0.495 I C 0.411 H C 0.377 I C 0.474 G C 0.446 S C 0.253 D T 0.238 F T 0.259 G C 0.348 G C 0.415 S C 0.394 F C 0.356 S C 0.316 A H 0.293 V H 0.411 T H 0.460 N H 0.483 G H 0.499 L H 0.533 G H 0.595 Y H 0.676 R H 0.752 Q H 0.876 S H 0.903 D H 0.926 Y H 0.966 E H 0.987 A H 0.990 A H 0.992 I H 0.995 A H 0.995 Q H 0.993 M H 0.992 T H 0.981 A H 0.939 D H 0.831 Y T 0.557 G T 0.700 V C 0.864 P C 0.614 H E 0.547 L E 0.723 S E 0.609 L H 0.278 Y H 0.315 R H 0.404 D H 0.440 A H 0.385 G H 0.308 M C 0.336 T C 0.397 F C 0.292 A H 0.267 I C 0.312 P H 0.385 A H 0.366 Q H 0.354 A H 0.388 A G 0.367 I H 0.315 Y C 0.243 S C 0.417 V C 0.369 D C 0.348 T S 0.466 L C 0.476 H C 0.579 P C 0.663 N C 0.774 N H 0.950 A H 0.971 G H 0.961 H H 0.989 R H 0.993 V H 0.993 I H 0.992 A H 0.992 R H 0.988 K H 0.978 L H 0.983 Q H 0.984 S H 0.973 F H 0.957 L H 0.942 D H 0.875 S H 0.785 H H 0.746 F H 0.518 L H 0.363 E H 0.313 H C 0.391 H C 0.340 H C 0.309 H C 0.319 H C 0.727 H C 0.997 END