# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b77A 193 9.06e-11 1h4rA 314 1.443 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2he7A 283 2.097 1zsqA 528 3.104 b.55.1.8,c.45.1.3 125616,125617 1mi1A 414 3.845 a.169.1.1,b.55.1.6 79137,79138 1qqcA 773 4.447 c.55.3.5,e.8.1.1 33724,43013 1ef1A 294 6.973 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1y6hA 177 8.108 d.167.1.1 116505 1mixA 206 8.601 a.11.2.1,b.55.1.5 79166,79167 2ew5A 181 9.042 2gk4A 232 9.569 2mcmA 112 9.739 b.1.7.1 22207 1qg7A 67 10.49 d.9.1.1 37449 1tgoA 773 12.54 c.55.3.5,e.8.1.1 33721,43010 1lw3A 657 13.09 b.55.1.8,c.45.1.3 91152,91153 2h7dA 101 13.76 1gg3A 279 14.45 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1f9rA 70 16.28 d.9.1.1 90484 1bf4A 63 16.34 b.34.13.1 37461 2cayA 145 16.48 b.55.1.12 130167 1awe 130 16.69 1rl4A 188 17.97 d.167.1.1 97636 1xyiA 66 19.09 2v76A 107 19.75 1a15A 67 20.93 d.9.1.1 37451 2j7zA 68 21.22 d.9.1.1 138131 1j0wA 103 22.59 b.55.1.2 90748 1azpA 66 22.98 b.34.13.1 37467 1bs4A 168 23.67 d.167.1.1 42287 2i74A 189 23.75 b.18.1.29 137100 1eazA 125 24.67 b.55.1.1 70113 1se9A 126 26.02 d.15.1.1 98821 1oeyA 83 26.08 d.15.2.2 92800 2hthB 140 27.02 b.55.1.12 136743 1usuA 260 27.58 d.14.1.8 99885 2gkpA 167 27.97 1xeoA 168 28.47 d.167.1.1 121913 3bs1A 103 28.68 1qhlA 227 31.04 c.37.1.12 32382 1t77A 414 32.91 a.169.1.1,b.55.1.6 112290,112291 1ouwA 152 34.18 b.77.3.1 93571 1h8cA 82 35.09 d.15.1.2 37608 2d4qA 257 37.69 1bnzA 64 39.30 b.34.13.1 37468 2dfkA 402 39.48 1dynA 125 39.76 b.55.1.1 26955 1lvlA 458 41.20 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2qytA 317 43.50 1ntvA 152 44.71 b.55.1.2 86168 1hy5A 136 45.65 a.24.11.1 65955 2iwaA 266 46.08 1yqbA 100 47.11 d.15.1.1 123876 1wmhB 86 47.34 d.15.2.2 114745 1icwA 72 48.30 d.9.1.1 37357 1nfkA 325 48.35 b.1.18.1,b.2.5.3 21929,22444 2g35A 100 48.75 b.55.1.5 134548 2bmzA 141 49.38 1wmhA 89 49.86 d.15.2.2 114744 1ntyA 311 50.03 a.87.1.1,b.55.1.1 103873,103874 1btkA 169 50.51 b.55.1.1 26959 2aehA 369 51.68 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1v39 322 52.63 1noaA 113 53.54 b.1.7.1 22208 1w1hA 151 54.34 b.55.1.1 114076 2p25A 126 54.98 1lmhA 184 56.14 d.167.1.1 74036 1j8iA 93 56.26 d.9.1.1 66438 2uwqA 86 56.40 1v2yA 105 57.42 d.15.1.1 100275 2gclA 261 57.93 b.55.1.10 134991 1zd7A 159 57.97 1a8dA 452 58.92 b.29.1.6,b.42.4.2 24262,25607 2v1yA 108 59.83 1plfA 72 60.08 d.9.1.1 37373 1v61A 132 60.25 b.55.1.1 108389 1irsA 112 61.30 b.55.1.2 26991 1ogwA 76 63.36 d.15.1.1 87001 1c8cA 64 64.73 b.34.13.1 59084 2coaA 125 68.53 b.55.1.1 130672 2c60A 111 69.81 d.15.2.2 129966 2o28A 184 70.50 3d2lA 243 71.22 1uvjA 664 72.09 e.8.1.6 100045 1jb7B 260 72.71 b.40.4.3 62839 1fjjA 159 72.72 b.17.1.2 59852 1v1pA 211 73.03 b.40.2.2,d.15.6.1 108268,108269 2qzbA 166 74.55 1vpt 348 76.33 2nptB 100 76.82 d.15.2.2 138449 1bmlC 362 77.11 d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1n5nA 180 77.33 d.167.1.1 85336 1esrA 76 77.58 d.9.1.1 37427 1e6eB 128 83.79 d.15.4.1 59300 2apoA 357 84.22 b.122.1.1,d.265.1.2 127133,127134 1v95A 130 86.03 c.51.1.1 108435 1uh6A 100 86.22 d.15.1.1 99394 3c5iA 369 87.17 1rlr 761 87.89 1lvl 458 88.82