# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.85e-14		
2cayA	145	0.1557	b.55.1.12	130167
2r19A	159	2.597		
1zsqA	528	4.783	b.55.1.8,c.45.1.3	125616,125617
1akyA	220	6.199	c.37.1.1,g.41.2.1	31896,45197
1yvoA	172	9.241	d.108.1.1	124106
2hthB	140	9.549	b.55.1.12	136743
4cpvA	108	9.608	a.39.1.4	17198
1ktbA	405	15.61	b.71.1.1,c.1.8.1	72960,72961
2rgxA	206	20.34		
1rroA	108	23.78	a.39.1.4	17195
1o7zA	77	24.63	d.9.1.1	86660
1nx8A	273	24.75	b.82.2.8	86374
2gclA	261	25.38	b.55.1.10	134991
2h7dA	101	28.27		
1qcsA	211	29.77	b.52.2.3,d.31.1.1	26927,38461
2j8mA	172	29.86		
1jr7A	311	36.67	b.82.2.3	63255
1y0nA	78	37.04	d.291.1.1	116305
1zyiA	171	37.25		
1oihA	301	38.92	b.82.2.5	93051
1rwyA	109	40.42	a.39.1.4	98002
2i7vA	459	42.18		
1pvaA	110	43.20	a.39.1.4	17207
2bsqA	146	50.37	c.120.1.1	129098
2abqA	306	52.71	c.72.1.1	126528
2djaA	84	55.86		
1qfgA	725	56.30	f.4.3.3	43803
1otjA	283	57.61	b.82.2.5	93517
1nf3A	195	57.83	c.37.1.8	85594
3b34A	891	58.18		
5palA	109	59.31	a.39.1.4	17215
2pvbA	107	62.61	a.39.1.4	17205
1zirA	173	65.43	b.11.1.1,b.11.1.1	125126,125127
1ak2A	233	66.21	c.37.1.1,g.41.2.1	31894,45195
1qf9A	194	70.64	c.37.1.1	31848
3c5cA	187	71.83		
1rkd	309	72.13		
2bz6H	254	79.94	b.47.1.2	129552
1ew0A	130	82.06	d.110.3.2	40905
2d3vA	196	83.02		
1v6zA	228	84.53	b.122.1.2,c.116.1.5	113551,113552
1m2dA	110	84.75	c.47.1.11	78476
1ukzA	203	88.70	c.37.1.1	31840