# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.57e-12		
2cayA	145	1.074	b.55.1.12	130167
2r19A	159	4.211		
1zsqA	528	14.57	b.55.1.8,c.45.1.3	125616,125617
1x8bA	289	27.14		
1akyA	220	35.77	c.37.1.1,g.41.2.1	31896,45197
4cpvA	108	37.22	a.39.1.4	17198
2bsqA	146	41.48	c.120.1.1	129098
1yvoA	172	42.78	d.108.1.1	124106
2q4kA	251	44.60	d.86.1.2	139864
1ktbA	405	46.44	b.71.1.1,c.1.8.1	72960,72961
1r0pA	312	52.65	d.144.1.7	96734
1jr7A	311	56.54	b.82.2.3	63255
2h7dA	101	57.75		
2h1cA	139	59.47	c.120.1.1	135944
2gdnA	267	71.64		
1zirA	173	72.17	b.11.1.1,b.11.1.1	125126,125127
2hthB	140	73.87	b.55.1.12	136743
1nx8A	273	75.11	b.82.2.8	86374
2djaA	84	75.94		
1jpaA	312	76.60	d.144.1.7	67011
2rgxA	206	76.81		
1otjA	283	80.35	b.82.2.5	93517
3cg5A	265	81.00		
1qf9A	194	81.28	c.37.1.1	31848
2gclA	261	86.06	b.55.1.10	134991
1o7zA	77	86.95	d.9.1.1	86660
1j1bA	420	88.64	d.144.1.7	90758