# List of top-scoring protein chains for T0444.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w68A	390	4.78e-19	a.25.1.2	109216
2uw2A	332	5.37e-19		
1smqA	399	2.28e-18	a.25.1.2	105766
1jk0A	419	2.28e-18	a.25.1.2	63142
2p1iA	349	1.11e-17		
2o1zA	311	1.44e-17		
1piyA	375	1.82e-16	a.25.1.2	94710
2aniA	346	2.12e-16		
1pizA	375	2.14e-16	a.25.1.2	94712
1mxrA	375	2.15e-16	a.25.1.2	85197
1ribA	375	2.22e-16	a.25.1.2	16788
1syyA	346	2.48e-16	a.25.1.2	106126
1av8A	340	2.65e-16	a.25.1.2	16796
2alxA	340	2.74e-16	a.25.1.2	126986
1pm2A	339	2.76e-16	a.25.1.2	94887
1rnrA	375	2.83e-16	a.25.1.2	16798
2av8A	340	3.11e-16	a.25.1.2	16792
1pfrA	340	3.13e-16	a.25.1.2	16790
1rsrA	375	3.19e-16	a.25.1.2	97815
1yfdA	375	3.47e-16	a.25.1.2	123059
1biqB	375	3.66e-16	a.25.1.2	16787
1pj0A	375	3.91e-16	a.25.1.2	94714
1biqA	375	4.67e-16	a.25.1.2	16786
2rccA	346	4.45e-15		
1jk0B	345	5.03e-15	a.25.1.2	63143
1kgnA	329	1.68e-14	a.25.1.2	68584
1uzrA	296	3.30e-14	a.25.1.2	108178
1r2fA	319	5.30e-14	a.25.1.2	16800
1za0A	275	0.8916	a.25.1.2	124774
2incA	491	5.723	a.25.1.2	137524
1t0qA	498	5.774	a.25.1.2	106220
2rdbA	498	6.531		
2oc5A	244	6.958		
3cdzB	684	11.29		
2r7eB	770	11.68		
1x7fA	385	17.05	b.62.1.2,c.1.8.12	109498,109499
2jmmA	156	29.13		
1y6nL	145	35.10		
2v1xA	591	37.87		
1ksoA	101	39.00	a.39.1.2	72926
1v54L	47	42.44	f.23.6.1	100333
2inpA	494	47.05		
2innA	511	48.15		
1vlkA	145	50.40	a.26.1.3	16888
1ys9A	254	52.68	c.108.1.14	123965
1xfsA	178	55.37	d.129.3.5	109589
1bplB	294	56.14	b.71.1.1	27716
1rh5C	53	60.63	f.23.29.1	97466
2cwlA	302	61.33	a.25.1.3	130927
3b55A	451	63.43		
1b3jA	274	67.25	b.1.1.2,d.19.1.1	20855,38319
1hyrC	275	67.35	b.1.1.2,d.19.1.1	61415,61416
2v8tA	302	68.31		
1r61A	207	78.34	c.8.8.1	97138
2uw1A	338	79.14		
1rf8B	100	79.70	a.210.1.1	97371
1e43A	483	80.82	b.71.1.1,c.1.8.1	59217,59218
1lk3A	160	88.11	a.26.1.3	73950
1ht3A	279	89.69	c.41.1.1	61243