# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 1.84e-51 a.25.1.2 63142 1xsm 390 3.48e-50 1w68A 390 4.27e-50 a.25.1.2 109216 2rccA 346 4.42e-50 1av8A 340 1.02e-49 a.25.1.2 16796 1mxrA 375 1.50e-49 a.25.1.2 85197 1biqA 375 1.59e-49 a.25.1.2 16786 1ribA 375 2.85e-49 a.25.1.2 16788 1syyA 346 4.35e-49 a.25.1.2 106126 1xikA 375 6.42e-49 a.25.1.2 16784 1kgnA 329 2.08e-47 a.25.1.2 68584 1r2fA 319 7.70e-47 a.25.1.2 16800 1jk0B 345 7.60e-45 a.25.1.2 63143 1t0qA 498 6.76e-07 a.25.1.2 106220 1t0qB 330 1.04e-05 a.25.1.2 106221 1mtyD 512 1.18e-05 a.25.1.2 16742 1mhyD 521 1.28e-05 a.25.1.2 16780 2oc5A 244 1.73e-05 2inpA 494 1.74e-05 2incA 491 1.83e-05 a.25.1.2 137524 1mhyB 395 7.59e-05 a.25.1.2 16781 2incB 322 0.000699 a.25.1.2 137525 1za0A 275 0.01244 a.25.1.2 124774 1afrA 345 0.1614 a.25.1.2 16805 2uw1A 338 0.2294 1oq9A 363 0.2608 a.25.1.2 87257 2cwlA 302 0.4569 a.25.1.3 130927 1o9iA 266 0.5258 a.25.1.3 92671 2j2fA 363 0.5314 1jkvA 266 0.6060 a.25.1.3 71719 1wwmA 190 0.8779 a.132.1.3 121363 2vglA 621 2.160 2jcdA 345 2.181 2itbA 206 2.280 1rcwA 231 2.991 a.132.1.4 97299 1zpyA 95 3.393 a.25.1.5 125479 1puoA 170 3.591 a.101.1.1,a.101.1.1 95134,95135 2f2gA 221 6.111 a.132.1.3 132816 1uddA 226 6.227 a.132.1.3 107776 1oxjA 173 7.315 a.60.1.2,a.118.1.13 87517,87518 2ejnA 153 7.348 a.101.1.1,a.101.1.1 132279,132280 1hd7A 318 7.497 d.151.1.1 41780 3chhA 336 8.604 2o3lA 85 8.882 2j7zA 68 9.212 d.9.1.1 138131 1e8yA 966 9.328 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1zkrA 153 9.541 a.101.1.1,a.101.1.1 125209,125210 2oy0A 262 9.664 1bi0 226 9.721 2vkhA 546 10.44 2q4xA 221 10.58 a.132.1.3 139880 1bix 287 11.86 1uelB 48 12.21 j.105.1.1 99266 2ftuA 118 14.28 a.13.1.1 134082 1nk4A 580 15.43 c.55.3.5,e.8.1.1 91923,91924 1icwA 72 15.83 d.9.1.1 37357 1gmxA 108 17.65 c.46.1.3 65355 1zrhA 274 18.69 1w63A 618 18.94 i.23.1.1 109192 2o4tA 100 19.43 1qhhA 167 20.41 c.37.1.19 32393 2nw5A 360 22.15 1v4vA 376 22.24 c.87.1.3 100313 1ng6A 148 22.29 a.182.1.1 85670 2ie4A 589 23.19 a.118.1.2 137291 1aquA 297 23.69 c.37.1.5 31942 1dn1B 267 24.86 a.47.2.1 17771 1ji6A 589 25.37 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1fx7A 230 25.76 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2oixA 186 27.08 1gw5A 621 28.17 a.118.1.10 70629 1b6a 478 28.66 1napA 70 29.12 d.9.1.1 37445 1b04A 318 29.70 d.142.2.2 41579 1b6aA 478 30.36 a.4.5.25,d.127.1.1 16223,41160 2j1oA 268 30.49 1sz9A 144 30.79 a.118.9.4 106139 2zcoA 293 32.07 1tvxA 75 34.08 d.9.1.1 37441 1gw5S 142 35.15 d.110.4.2 70633 1c4oA 664 35.60 c.37.1.19,c.37.1.19 32415,32416 1m12A 84 35.74 a.64.1.1 84745 1yakA 263 36.54 a.132.1.3 122833 1utg 70 36.62 1fu1A 203 37.25 b.59.1.1,h.1.11.1 27076,45630 2b6cA 220 39.00 a.118.1.17 127983 2fx0A 201 39.33 a.4.1.9,a.121.1.1 134269,134270 1t0tV 248 39.63 d.58.4.10 106229 2hhgA 139 41.08 1uw0A 117 41.47 g.39.1.12 108063 1ywfA 296 43.85 c.45.1.5 124144 3cetA 334 44.21 1bn5 478 45.62 2i3fA 224 46.22 1b59A 370 47.37 a.4.5.25,d.127.1.1 16225,41162 1ta8A 332 47.67 d.142.2.2 112375 8prkA 287 48.14 b.40.5.1 25395 1yppA 286 48.51 b.40.5.1 25407 2ib0A 170 49.27 1e9gA 286 49.75 b.40.5.1 59393 1nfvA 179 50.00 a.25.1.1 85642 2vhbA 146 50.12 a.1.1.2 15629 1p9cA 45 50.50 j.105.1.1 94386 1dokA 77 51.37 d.9.1.1 37420 1rtwA 220 52.57 a.132.1.3 97823 2vklA 90 53.88 1rr7A 129 56.67 a.4.1.14 105075 1mgsA 73 58.32 d.9.1.1 37389 2ddmA 283 59.10 1yuzA 202 59.33 a.25.1.1,g.41.5.1 124077,124078 2vm6A 150 59.35 1jcfA 344 61.07 c.55.1.1,c.55.1.1 62878,62879 1g0yI 21 61.55 k.19.1.1 46448 2ormA 67 62.70 2h5nA 133 65.24 1m7sA 484 66.37 e.5.1.1 74574 2vlaA 285 66.77 1inzA 148 67.08 a.118.9.1 62610 1csh 435 69.92 1zp4A 304 72.15 1sr9A 644 72.71 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1ezfA 340 75.85 a.128.1.2 19440 1ml0D 76 76.33 d.9.1.1 79254 2yukA 90 76.95 1wy5A 317 77.49 c.26.2.5,d.229.1.1 121428,121429 1rh5C 53 78.80 f.23.29.1 97466 1rvkA 382 81.45 c.1.11.2,d.54.1.1 97928,97929 2bsqE 77 81.68 a.43.1.8 129102 2bqxA 173 81.99 1u2cA 246 82.51 b.1.6.2,d.272.1.1 107610,107611 1plfA 72 82.76 d.9.1.1 37373 2c27A 315 82.80 d.108.1.1 129659 1elqA 390 85.20 c.67.1.3 34436 1dhnA 121 86.35 d.96.1.3 40663 1z72A 225 86.70 a.132.1.3 124583 2cs2A 134 86.78 2o4aA 93 86.80 1qxyA 252 89.26 d.127.1.1 96565 3bruA 222 89.52