# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 6.61e-43 a.25.1.2 63142 2rccA 346 1.19e-42 1w68A 390 3.16e-42 a.25.1.2 109216 1xsm 390 3.94e-42 1av8A 340 6.08e-42 a.25.1.2 16796 1mxrA 375 7.54e-42 a.25.1.2 85197 1biqA 375 8.78e-42 a.25.1.2 16786 1ribA 375 1.80e-41 a.25.1.2 16788 1syyA 346 2.71e-41 a.25.1.2 106126 1xikA 375 3.06e-41 a.25.1.2 16784 1kgnA 329 1.35e-40 a.25.1.2 68584 1r2fA 319 4.21e-40 a.25.1.2 16800 1jk0B 345 1.88e-37 a.25.1.2 63143 1t0qA 498 0.000100 a.25.1.2 106220 2oc5A 244 0.001182 2inpA 494 0.004233 1t0qB 330 0.006413 a.25.1.2 106221 2incA 491 0.01027 a.25.1.2 137524 1mtyD 512 0.01116 a.25.1.2 16742 1za0A 275 0.01386 a.25.1.2 124774 1mhyB 395 0.01671 a.25.1.2 16781 1mhyD 521 0.01800 a.25.1.2 16780 2incB 322 0.2971 a.25.1.2 137525 2cwlA 302 0.3170 a.25.1.3 130927 1oq9A 363 0.3904 a.25.1.2 87257 1o9iA 266 0.5876 a.25.1.3 92671 1jkvA 266 0.6963 a.25.1.3 71719 2uw1A 338 0.8193 2j2fA 363 1.378 1afrA 345 1.543 a.25.1.2 16805 1uddA 226 1.947 a.132.1.3 107776 2f2gA 221 2.101 a.132.1.3 132816 1wwmA 190 2.277 a.132.1.3 121363 1zpyA 95 2.783 a.25.1.5 125479 1rcwA 231 2.883 a.132.1.4 97299 2itbA 206 3.087 1h0aA 158 4.261 a.118.9.1 76434 1yakA 263 6.345 a.132.1.3 122833 1hd7A 318 6.730 d.151.1.1 41780 1bi0 226 7.178 1c4oA 664 7.541 c.37.1.19,c.37.1.19 32415,32416 1sz9A 144 7.724 a.118.9.4 106139 1uelB 48 9.081 j.105.1.1 99266 1puoA 170 9.95 a.101.1.1,a.101.1.1 95134,95135 2q4xA 221 10.57 a.132.1.3 139880 1eyhA 144 10.69 a.118.9.1 19214 1bix 287 11.21 1dn1B 267 11.72 a.47.2.1 17771 2jcdA 345 12.39 1b71A 191 13.78 a.25.1.1,g.41.5.1 16647,45246 1icwA 72 15.02 d.9.1.1 37357 2nw5A 360 15.57 1b04A 318 16.69 d.142.2.2 41579 1tyhA 248 16.72 a.132.1.3 107458 2oixA 186 19.06 2oy0A 262 19.64 1ta8A 332 20.60 d.142.2.2 112375 2o3lA 85 21.49 1ji6A 589 21.79 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1v4vA 376 23.12 c.87.1.3 100313 2ejnA 153 23.35 a.101.1.1,a.101.1.1 132279,132280 2j1oA 268 23.94 2oa6A 320 24.14 1zkrA 153 25.28 a.101.1.1,a.101.1.1 125209,125210 1qhhA 167 26.47 c.37.1.19 32393 1eduA 149 28.37 a.118.9.1 19215 1napA 70 29.11 d.9.1.1 37445 2j7zA 68 29.47 d.9.1.1 138131 2qzcA 214 30.42 2vd6A 503 31.54 2o4tA 100 31.93 1rtwA 220 32.11 a.132.1.3 97823 1uw0A 117 32.60 g.39.1.12 108063 1tvxA 75 33.34 d.9.1.1 37441 2exrA 524 34.47 2b7eA 59 36.64 1ng6A 148 36.78 a.182.1.1 85670 1lox 662 37.19 2fb2A 340 38.75 2dtr 226 38.80 2ddmA 283 40.19 2vebA 195 41.23 1p9cA 45 41.81 j.105.1.1 94386 1mgsA 73 43.93 d.9.1.1 37389 1wy5A 317 43.95 c.26.2.5,d.229.1.1 121428,121429 1lkoA 191 44.81 a.25.1.1,g.41.5.1 78063,78064 1inzA 148 46.29 a.118.9.1 62610 1vjxA 157 46.98 a.25.1.1 100837 1y66A 52 47.47 1xgwA 176 48.38 2bqxA 173 49.31 2gh0A 213 49.58 2qcxA 263 51.64 1b6aA 478 51.89 a.4.5.25,d.127.1.1 16223,41160 3bjdA 332 52.27 1pyfA 312 53.09 c.1.7.1 95334 2zcoA 293 54.06 2felA 359 55.02 1vhcA 224 56.23 c.1.10.1 100661 2b1wA 127 57.40 2i3fA 224 57.96 2bsxA 253 59.18 c.56.2.1 129128 1ryt 190 59.54 1i40A 175 59.85 b.40.5.1 66024 1in6A 334 61.43 a.4.5.11,c.37.1.20 62601,62602 1utg 70 61.96 2okjA 504 62.83 1bn5 478 62.89 1di1A 300 64.33 a.128.1.4 19446 1wy2A 351 64.37 1b6a 478 64.91 1jcfA 344 65.81 c.55.1.1,c.55.1.1 62878,62879 1gmxA 108 66.57 c.46.1.3 65355 3by7A 100 66.72 2yzsA 315 67.03 1d1qA 161 68.59 c.44.1.1 32642 2p3xA 339 70.45 2o3hA 285 73.26 2vklA 90 74.56 1dmtA 696 75.11 d.92.1.4 40296 1wvfA 520 75.12 d.58.32.1,d.145.1.1 121337,121338 1aquA 297 75.52 c.37.1.5 31942 1cwyA 500 75.98 c.1.8.1 28789 2au7A 175 76.50 1g96A 120 76.93 d.17.1.2 60393 1idrA 136 80.11 a.1.1.1 62301 1yp2A 451 80.60 b.81.1.4,c.68.1.6 123798,123799 2yziA 138 80.70 2ehsA 77 81.18 4crxA 322 81.23 a.60.9.1,d.163.1.1 18095,42155 1ezfA 340 81.58 a.128.1.2 19440 2ou3A 161 82.40 1u8sA 192 84.03 d.58.18.5,d.58.18.5 107737,107738 2cj4A 150 84.74 a.29.6.1 130518 2a5vA 213 84.87 1b59A 370 85.12 a.4.5.25,d.127.1.1 16225,41162 1csh 435 85.72 1ywfA 296 87.93 c.45.1.5 124144 1lnwA 147 89.20 a.4.5.28 78104 1rh5C 53 89.84 f.23.29.1 97466