# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 2.59e-41 a.25.1.2 63142 2rccA 346 4.53e-41 1w68A 390 1.09e-40 a.25.1.2 109216 1xsm 390 1.48e-40 1av8A 340 1.64e-40 a.25.1.2 16796 1mxrA 375 1.66e-40 a.25.1.2 85197 1biqA 375 2.52e-40 a.25.1.2 16786 1ribA 375 5.14e-40 a.25.1.2 16788 1xikA 375 7.32e-40 a.25.1.2 16784 1syyA 346 8.44e-40 a.25.1.2 106126 1kgnA 329 3.09e-39 a.25.1.2 68584 1r2fA 319 7.82e-39 a.25.1.2 16800 1jk0B 345 3.56e-36 a.25.1.2 63143 1t0qA 498 0.000316 a.25.1.2 106220 2oc5A 244 0.001493 1za0A 275 0.005541 a.25.1.2 124774 1t0qB 330 0.007908 a.25.1.2 106221 2inpA 494 0.009913 2incA 491 0.02155 a.25.1.2 137524 1mtyD 512 0.03996 a.25.1.2 16742 1mhyB 395 0.04380 a.25.1.2 16781 1mhyD 521 0.07402 a.25.1.2 16780 2cwlA 302 0.3331 a.25.1.3 130927 1oq9A 363 0.3356 a.25.1.2 87257 2uw1A 338 0.3653 2incB 322 0.3970 a.25.1.2 137525 1o9iA 266 0.4839 a.25.1.3 92671 1jkvA 266 0.5926 a.25.1.3 71719 1afrA 345 0.6003 a.25.1.2 16805 2j2fA 363 0.6878 2f2gA 221 1.358 a.132.1.3 132816 1uddA 226 1.549 a.132.1.3 107776 2itbA 206 1.554 1wwmA 190 1.887 a.132.1.3 121363 1zpyA 95 2.550 a.25.1.5 125479 1rcwA 231 2.908 a.132.1.4 97299 1h0aA 158 3.285 a.118.9.1 76434 2jcdA 345 5.700 1sz9A 144 6.662 a.118.9.4 106139 1yakA 263 6.761 a.132.1.3 122833 1bi0 226 7.613 1c4oA 664 8.244 c.37.1.19,c.37.1.19 32415,32416 1hd7A 318 9.126 d.151.1.1 41780 1eyhA 144 9.153 a.118.9.1 19214 1uelB 48 9.508 j.105.1.1 99266 1ryt 190 10.57 1puoA 170 11.72 a.101.1.1,a.101.1.1 95134,95135 2q4xA 221 11.91 a.132.1.3 139880 2oixA 186 13.16 1lkoA 191 14.79 a.25.1.1,g.41.5.1 78063,78064 2oa6A 320 14.85 1dn1B 267 14.88 a.47.2.1 17771 1b71A 191 15.67 a.25.1.1,g.41.5.1 16647,45246 1icwA 72 16.24 d.9.1.1 37357 1bix 287 18.46 2nw5A 360 19.61 1v4vA 376 19.78 c.87.1.3 100313 1tyhA 248 20.98 a.132.1.3 107458 1lox 662 22.62 1qhhA 167 22.67 c.37.1.19 32393 2o3lA 85 22.96 1zkrA 153 23.53 a.101.1.1,a.101.1.1 125209,125210 1b04A 318 23.83 d.142.2.2 41579 2oy0A 262 23.85 2ejnA 153 24.46 a.101.1.1,a.101.1.1 132279,132280 2vebA 195 24.55 2o4tA 100 25.23 1eduA 149 26.92 a.118.9.1 19215 2vd6A 503 27.02 1rtwA 220 28.36 a.132.1.3 97823 2j7zA 68 28.92 d.9.1.1 138131 1uw0A 117 30.28 g.39.1.12 108063 1ta8A 332 30.51 d.142.2.2 112375 1nfvA 179 31.31 a.25.1.1 85642 2qzcA 214 32.51 1tvxA 75 32.63 d.9.1.1 37441 2dtr 226 33.01 2exrA 524 34.63 1p9cA 45 34.88 j.105.1.1 94386 1di1A 300 36.87 a.128.1.4 19446 1napA 70 38.86 d.9.1.1 37445 1ji6A 589 40.31 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1in6A 334 40.85 a.4.5.11,c.37.1.20 62601,62602 2ddmA 283 41.58 2b7eA 59 42.03 2j1oA 268 42.95 1aquA 297 43.57 c.37.1.5 31942 1xgwA 176 44.24 1ng6A 148 45.64 a.182.1.1 85670 2okjA 504 46.38 1mgsA 73 46.60 d.9.1.1 37389 1pyfA 312 48.50 c.1.7.1 95334 2bqxA 173 50.18 1oxjA 173 50.68 a.60.1.2,a.118.1.13 87517,87518 2b1wA 127 50.97 1dmtA 696 51.29 d.92.1.4 40296 3by7A 100 51.70 1b6aA 478 51.71 a.4.5.25,d.127.1.1 16223,41160 2zcoA 293 51.72 1i40A 175 52.09 b.40.5.1 66024 1vjxA 157 52.63 a.25.1.1 100837 1wy5A 317 52.99 c.26.2.5,d.229.1.1 121428,121429 2qcxA 263 54.87 2bsxA 253 54.97 c.56.2.1 129128 4crxA 322 55.62 a.60.9.1,d.163.1.1 18095,42155 1m7sA 484 55.97 e.5.1.1 74574 2au7A 175 56.66 1vhcA 224 63.33 c.1.10.1 100661 2vklA 90 63.68 1bn5 478 64.37 1jcfA 344 64.66 c.55.1.1,c.55.1.1 62878,62879 1y66A 52 65.29 2gh0A 213 65.57 1ezfA 340 65.92 a.128.1.2 19440 1rh5C 53 66.75 f.23.29.1 97466 1d1qA 161 67.16 c.44.1.1 32642 1wvfA 520 68.12 d.58.32.1,d.145.1.1 121337,121338 1b6a 478 68.56 2yziA 138 69.01 2fb2A 340 71.26 1rktA 205 71.64 a.4.1.9,a.121.1.1 97623,97624 2bvfA 459 71.98 2i3fA 224 72.52 1gmxA 108 73.53 c.46.1.3 65355 1yuzA 202 73.79 a.25.1.1,g.41.5.1 124077,124078 1g96A 120 74.33 d.17.1.2 60393 1kbuA 349 76.01 a.60.9.1,d.163.1.1 72284,72285 1vgvA 384 77.88 c.87.1.3 100608 2yzsA 315 77.89 1utg 70 77.95 1n3lA 372 79.32 c.26.1.1 79966 1u8sA 192 80.07 d.58.18.5,d.58.18.5 107737,107738 2felA 359 80.16 1z72A 225 81.78 a.132.1.3 124583 2occL 47 84.77 f.23.6.1 43526 2ehsA 77 85.36 1inzA 148 85.36 a.118.9.1 62610 1b59A 370 85.56 a.4.5.25,d.127.1.1 16225,41162 2p3xA 339 85.59 1ni4A 365 86.93 c.36.1.11 85728 1idrA 136 88.15 a.1.1.1 62301 1sr9A 644 88.57 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2ib0A 170 89.15