# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 6.46e-37 1jk0A 419 1.04e-36 a.25.1.2 63142 1w68A 390 1.45e-36 a.25.1.2 109216 1mxrA 375 2.51e-36 a.25.1.2 85197 2rccA 346 3.01e-36 1av8A 340 3.67e-36 a.25.1.2 16796 1biqA 375 5.25e-36 a.25.1.2 16786 1ribA 375 6.37e-36 a.25.1.2 16788 1xikA 375 1.22e-35 a.25.1.2 16784 1syyA 346 1.99e-35 a.25.1.2 106126 1kgnA 329 4.41e-35 a.25.1.2 68584 1r2fA 319 2.19e-34 a.25.1.2 16800 1jk0B 345 5.51e-32 a.25.1.2 63143 2oc5A 244 0.000343 1t0qB 330 0.000471 a.25.1.2 106221 2incB 322 0.004645 a.25.1.2 137525 1mhyB 395 0.005102 a.25.1.2 16781 1t0qA 498 0.009170 a.25.1.2 106220 1mtyD 512 0.07111 a.25.1.2 16742 1mhyD 521 0.1264 a.25.1.2 16780 1za0A 275 0.1297 a.25.1.2 124774 2incA 491 0.3197 a.25.1.2 137524 1rcwA 231 0.3818 a.132.1.4 97299 2inpA 494 0.6388 1uddA 226 1.157 a.132.1.3 107776 2uw1A 338 3.810 2cwlA 302 4.020 a.25.1.3 130927 1afrA 345 4.295 a.25.1.2 16805 3chhA 336 5.634 3cetA 334 8.349 1wwmA 190 8.594 a.132.1.3 121363 1o9iA 266 9.486 a.25.1.3 92671 1jkvA 266 10.19 a.25.1.3 71719 2f2gA 221 16.82 a.132.1.3 132816 1bi0 226 17.07 2aplA 157 19.41 a.258.1.1 127132 2jcdA 345 19.52 1h0aA 158 19.94 a.118.9.1 76434 3c1mA 473 20.56 1o0yA 260 20.61 c.1.10.1 80756 1t1uA 639 21.06 c.43.1.3,c.43.1.3 119110,119111 1xl7A 612 21.50 c.43.1.3,c.43.1.3 115438,115439 2a4aA 281 22.00 c.1.10.1 126150 2h4tA 626 25.61 3bqwA 351 25.64 1yuzA 202 26.22 a.25.1.1,g.41.5.1 124077,124078 2itbA 206 27.29 1jcjA 260 32.87 c.1.10.1 66499 1xgwA 176 33.38 2q4xA 221 34.29 a.132.1.3 139880 1dhnA 121 34.74 d.96.1.3 40663 1cewI 108 35.76 d.17.1.2 37999 1atlA 202 35.80 d.92.1.9 40322 1e9gA 286 38.12 b.40.5.1 59393 1p9cA 45 39.03 j.105.1.1 94386 1pyfA 312 39.07 c.1.7.1 95334 1culA 217 39.53 d.58.29.1 39417 1azsA 220 40.86 d.58.29.1 39416 1yakA 263 42.35 a.132.1.3 122833 1uw0A 117 43.59 g.39.1.12 108063 2fzfA 175 44.87 a.25.1.1 134437 1yppA 286 44.89 b.40.5.1 25407 1dgsA 667 45.23 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1tyhA 248 46.49 a.132.1.3 107458 1oq9A 363 47.96 a.25.1.2 87257 2j2fA 363 47.99 1icwA 72 49.62 d.9.1.1 37357 2zcoA 293 50.94 2debA 653 51.21 2oa6A 320 51.41 1n7kA 234 51.66 c.1.10.1 85374 2oixA 186 52.38 2veqA 565 54.38 2z4tA 514 55.19 1hd7A 318 55.30 d.151.1.1 41780 2z3tA 425 55.89 1pz1A 333 55.97 c.1.7.1 95390 1rtwA 220 58.36 a.132.1.3 97823 1kbuA 349 59.69 a.60.9.1,d.163.1.1 72284,72285 1ohuA 175 61.38 f.1.4.1 93029 1kn1B 161 61.54 a.1.1.3 77456 8prkA 287 61.62 b.40.5.1 25395 1v54D 147 62.73 f.23.1.1 100325 1c1dA 355 66.29 c.2.1.7,c.58.1.1 30270,33918 1dmtA 696 67.06 d.92.1.4 40296 1ezfA 340 68.66 a.128.1.2 19440 2j7zA 68 69.40 d.9.1.1 138131 1b04A 318 69.43 d.142.2.2 41579 1eyhA 144 73.49 a.118.9.1 19214 1o12A 376 74.13 b.92.1.5,c.1.9.10 80758,80759 4crxA 322 74.51 a.60.9.1,d.163.1.1 18095,42155 2dtr 226 80.45 3bnyA 320 82.28 1ihjA 98 82.74 b.36.1.1 62382 2pgeA 377 82.99 1phnB 172 83.31 a.1.1.3 15642 2fcwA 109 83.98 a.13.1.1 133288 1z72A 225 84.55 a.132.1.3 124583 2exrA 524 85.19 1ys4A 354 85.79 1sz9A 144 86.73 a.118.9.4 106139 2cs2A 134 87.34 1xdnA 277 87.80 d.142.2.4 115168 2qzcA 214 88.97 1eqkA 102 89.28 d.17.1.2 37998 1wc1A 226 89.77 d.58.29.1 114492