# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 2.38e-43 a.25.1.2 63142 2rccA 346 1.41e-42 1xsm 390 1.50e-42 1w68A 390 1.52e-42 a.25.1.2 109216 1av8A 340 4.59e-42 a.25.1.2 16796 1mxrA 375 6.69e-42 a.25.1.2 85197 1biqA 375 6.85e-42 a.25.1.2 16786 1ribA 375 1.59e-41 a.25.1.2 16788 1xikA 375 2.62e-41 a.25.1.2 16784 1syyA 346 3.89e-41 a.25.1.2 106126 1kgnA 329 1.15e-40 a.25.1.2 68584 1r2fA 319 4.68e-40 a.25.1.2 16800 1jk0B 345 8.42e-38 a.25.1.2 63143 1t0qA 498 0.000115 a.25.1.2 106220 2oc5A 244 0.000525 1t0qB 330 0.000939 a.25.1.2 106221 2incA 491 0.002045 a.25.1.2 137524 1mtyD 512 0.003277 a.25.1.2 16742 2inpA 494 0.004287 1mhyD 521 0.004803 a.25.1.2 16780 1za0A 275 0.006542 a.25.1.2 124774 1mhyB 395 0.01182 a.25.1.2 16781 2incB 322 0.06706 a.25.1.2 137525 1afrA 345 0.1855 a.25.1.2 16805 1oq9A 363 0.3045 a.25.1.2 87257 2uw1A 338 0.4030 2j2fA 363 0.6850 1o9iA 266 0.7851 a.25.1.3 92671 2cwlA 302 0.8794 a.25.1.3 130927 1jkvA 266 1.023 a.25.1.3 71719 2jcdA 345 1.745 1wwmA 190 2.726 a.132.1.3 121363 1zpyA 95 2.798 a.25.1.5 125479 1hd7A 318 3.797 d.151.1.1 41780 2itbA 206 3.860 3chhA 336 4.830 1rcwA 231 5.137 a.132.1.4 97299 1bix 287 5.566 1w99A 558 5.694 2ejnA 153 5.782 a.101.1.1,a.101.1.1 132279,132280 1ji6A 589 6.418 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1puoA 170 6.592 a.101.1.1,a.101.1.1 95134,95135 1bi0 226 7.002 1uelB 48 7.140 j.105.1.1 99266 1c4oA 664 8.679 c.37.1.19,c.37.1.19 32415,32416 1zkrA 153 10.45 a.101.1.1,a.101.1.1 125209,125210 2q4xA 221 10.80 a.132.1.3 139880 1yakA 263 11.57 a.132.1.3 122833 1sz9A 144 11.59 a.118.9.4 106139 1icwA 72 13.00 d.9.1.1 37357 1h0aA 158 13.03 a.118.9.1 76434 2f2gA 221 13.86 a.132.1.3 132816 2oixA 186 15.82 1dn1B 267 16.17 a.47.2.1 17771 1v4vA 376 16.53 c.87.1.3 100313 2vd6A 503 22.14 1aquA 297 22.24 c.37.1.5 31942 1elqA 390 22.47 c.67.1.3 34436 2nw5A 360 22.68 1tyhA 248 23.61 a.132.1.3 107458 1lox 662 24.57 1oxjA 173 24.77 a.60.1.2,a.118.1.13 87517,87518 2i3fA 224 24.89 1b04A 318 24.91 d.142.2.2 41579 2o3lA 85 25.59 1wvfA 520 26.88 d.58.32.1,d.145.1.1 121337,121338 1ezfA 340 27.91 a.128.1.2 19440 1dhnA 121 28.27 d.96.1.3 40663 1ywfA 296 29.02 c.45.1.5 124144 1nfvA 179 29.39 a.25.1.1 85642 2exrA 524 29.46 1p9cA 45 30.23 j.105.1.1 94386 2o4tA 100 30.37 3by7A 100 30.75 1qhhA 167 30.77 c.37.1.19 32393 1ng6A 148 30.94 a.182.1.1 85670 2yzsA 315 32.25 1uddA 226 32.39 a.132.1.3 107776 2ddmA 283 33.64 1twiA 434 36.88 b.49.2.3,c.1.6.1 107399,107400 2oy0A 262 37.27 1gmxA 108 37.99 c.46.1.3 65355 1utg 70 38.19 2oa6A 320 39.00 2j7zA 68 39.31 d.9.1.1 138131 1dmtA 696 39.36 d.92.1.4 40296 2bqxA 173 40.33 2j1oA 268 40.56 1rh5C 53 41.20 f.23.29.1 97466 1z72A 225 41.55 a.132.1.3 124583 1eyhA 144 42.78 a.118.9.1 19214 1otkA 249 43.67 a.25.1.2 93521 3bjdA 332 43.68 1jcfA 344 44.58 c.55.1.1,c.55.1.1 62878,62879 1y66A 52 45.71 2b6cA 220 46.11 a.118.1.17 127983 2aplA 157 47.56 a.258.1.1 127132 1kbuA 349 48.71 a.60.9.1,d.163.1.1 72284,72285 1ciy 590 50.34 1napA 70 50.42 d.9.1.1 37445 2dtr 226 50.92 1di1A 300 52.34 a.128.1.4 19446 1cwyA 500 52.81 c.1.8.1 28789 1u8sA 192 53.47 d.58.18.5,d.58.18.5 107737,107738 1knzA 164 53.61 e.34.1.1 68709 1t0tV 248 53.68 d.58.4.10 106229 2bsqE 77 56.83 a.43.1.8 129102 2qzcA 214 56.89 1w30A 201 57.18 c.61.1.1 114118 1tvxA 75 57.87 d.9.1.1 37441 1inzA 148 58.30 a.118.9.1 62610 1fx7A 230 58.36 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1tufA 434 58.37 b.49.2.3,c.1.6.1 107335,107336 1eluA 390 58.71 c.67.1.3 34434 1w1kA 560 60.11 d.58.32.1,d.145.1.1 109059,109060 1nd6A 354 60.81 c.60.1.2 80407 1yuzA 202 65.40 a.25.1.1,g.41.5.1 124077,124078 4crxA 322 66.60 a.60.9.1,d.163.1.1 18095,42155 1i40A 175 67.91 b.40.5.1 66024 1r4cA 110 68.45 d.17.1.2 104793 1wy2A 351 68.60 1xgwA 176 69.89 2c43A 323 70.61 5eauA 548 71.62 a.102.4.1,a.128.1.3 18851,19443 1ux8A 132 71.69 a.1.1.1 113449 2yziA 138 71.72 1rtwA 220 71.89 a.132.1.3 97823 1f44A 324 74.10 a.60.9.1,d.163.1.1 64982,64983 1sc6A 404 77.62 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2b1wA 127 77.71 1sr9A 644 77.79 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1xo0A 324 78.57 a.60.9.1,d.163.1.1 115674,115675 1wn1A 356 81.78 2vebA 195 82.36 1ciyA 590 83.57 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pv9A 348 84.31 c.55.2.1,d.127.1.1 95157,95158 2cs2A 134 84.46 1g96A 120 85.01 d.17.1.2 60393 2c27A 315 85.37 d.108.1.1 129659 1uw0A 117 88.07 g.39.1.12 108063 1gc5A 467 88.12 c.72.1.3 60429 1ta8A 332 88.90 d.142.2.2 112375 2ie4A 589 89.07 a.118.1.2 137291 2hhgA 139 89.26