# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 4.93e-40 a.25.1.2 63142 2rccA 346 3.70e-39 1av8A 340 6.42e-39 a.25.1.2 16796 1mxrA 375 2.23e-38 a.25.1.2 85197 1w68A 390 2.66e-38 a.25.1.2 109216 1xsm 390 3.06e-38 1ribA 375 8.02e-38 a.25.1.2 16788 1biqA 375 1.00e-37 a.25.1.2 16786 1syyA 346 4.42e-37 a.25.1.2 106126 1xikA 375 4.69e-37 a.25.1.2 16784 1r2fA 319 5.81e-37 a.25.1.2 16800 1kgnA 329 1.18e-36 a.25.1.2 68584 1jk0B 345 7.46e-34 a.25.1.2 63143 1t0qA 498 0.002037 a.25.1.2 106220 2oc5A 244 0.002259 1za0A 275 0.003245 a.25.1.2 124774 2incA 491 0.007388 a.25.1.2 137524 2j2fA 363 0.008075 1t0qB 330 0.009417 a.25.1.2 106221 2inpA 494 0.01945 1mhyB 395 0.02799 a.25.1.2 16781 1mhyD 521 0.04408 a.25.1.2 16780 1afrA 345 0.2112 a.25.1.2 16805 1oq9A 363 0.4635 a.25.1.2 87257 1otkA 249 0.7906 a.25.1.2 93521 2uw1A 338 0.9544 2incB 322 1.126 a.25.1.2 137525 1c4oA 664 1.431 c.37.1.19,c.37.1.19 32415,32416 1ji6A 589 2.029 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1mtyD 512 2.273 a.25.1.2 16742 2d1cA 496 2.361 2jcdA 345 2.554 2cwlA 302 2.830 a.25.1.3 130927 2ptzA 432 3.025 1mroB 442 3.642 a.89.1.1,d.58.31.2 18531,39449 3bqyA 209 4.546 1kblA 873 4.670 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ldjA 760 6.051 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2ip1A 432 6.289 2hbvA 334 7.229 c.1.9.15 136320 1zu0A 529 7.266 1wwmA 190 7.635 a.132.1.3 121363 2itbA 206 7.638 1eduA 149 8.128 a.118.9.1 19215 1zpyA 95 8.367 a.25.1.5 125479 1rcwA 231 8.942 a.132.1.4 97299 1gc5A 467 9.665 c.72.1.3 60429 1h0aA 158 9.96 a.118.9.1 76434 2vccA 891 10.18 1wn1A 356 11.88 2hw2A 143 13.01 1k0fA 277 13.23 c.92.2.2 71974 1vgvA 384 13.28 c.87.1.3 100608 1e3mA 800 13.74 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1y1xA 191 14.36 a.39.1.8 116374 1jgcA 161 14.44 a.25.1.1 66673 1cs0A 1073 14.78 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1bi0 226 15.26 2yzsA 315 15.81 1eexA 554 17.03 c.1.19.3 29650 1puoA 170 17.20 a.101.1.1,a.101.1.1 95134,95135 2gfhA 260 17.71 c.108.1.6 135096 1v4vA 376 18.05 c.87.1.3 100313 1fwrA 213 18.70 c.1.10.1 29164 1qba 858 19.46 2nw5A 360 19.86 3tdtA 274 20.50 b.81.1.2 28053 1oxjA 173 21.54 a.60.1.2,a.118.1.13 87517,87518 1yakA 263 22.02 a.132.1.3 122833 1dn1B 267 22.05 a.47.2.1 17771 1a0cA 438 22.41 c.1.15.3 29529 1o9iA 266 22.61 a.25.1.3 92671 1eyhA 144 22.81 a.118.9.1 19214 1hd7A 318 23.04 d.151.1.1 41780 1o0yA 260 25.24 c.1.10.1 80756 1bpoA 494 25.70 a.118.1.4,b.69.6.1 19143,27670 1wvfA 520 26.04 d.58.32.1,d.145.1.1 121337,121338 3b40A 417 26.91 1sz9A 144 27.21 a.118.9.4 106139 2j1pA 293 27.36 2i3fA 224 27.41 1jkvA 266 28.86 a.25.1.3 71719 2fcwA 109 29.22 a.13.1.1 133288 2d80A 318 29.74 1uelB 48 31.66 j.105.1.1 99266 3b85A 208 31.99 2gfpA 375 32.13 2uy1A 493 32.40 1nk4A 580 32.45 c.55.3.5,e.8.1.1 91923,91924 1ed8A 449 33.87 c.76.1.1 34988 1bix 287 34.60 2ds3A 761 36.24 2ejnA 153 36.26 a.101.1.1,a.101.1.1 132279,132280 2h1yA 321 36.51 1u5uA 374 37.36 e.5.1.2 113052 1di1A 300 37.82 a.128.1.4 19446 2j1oA 268 40.54 1el4A 195 41.88 a.39.1.5 59453 1ng6A 148 41.96 a.182.1.1 85670 2hpkA 208 42.02 1lycA 343 42.81 a.93.1.1 74344 1qpaA 345 43.90 a.93.1.1 18585 1dmr 823 44.05 3by7A 100 45.14 1ggvA 232 45.22 c.69.1.9 34683 1hkkA 364 45.81 c.1.8.5,d.26.3.1 90634,90635 2bqxA 173 46.15 1e4mM 501 46.35 c.1.8.4 59226 1hr6A 475 46.75 d.185.1.1,d.185.1.1 61164,61165 2oy0A 262 47.06 2fp3A 316 47.09 1w63A 618 47.87 i.23.1.1 109192 7ceiB 206 48.49 d.4.1.1 37134 3cbuA 214 48.64 2c92A 160 50.23 1vr8A 142 50.43 d.312.1.1 120445 1inzA 148 52.37 a.118.9.1 62610 1xgwA 176 52.60 1ji1A 637 52.68 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2gdrA 202 52.81 2fjuB 799 53.21 2oa6A 320 54.25 1f4qA 165 54.93 a.39.1.8 17360 2bvyA 475 55.21 b.1.18.2,c.1.8.3 129301,129302 5eau 548 56.08 1alvA 173 58.30 a.39.1.8 17370 1icwA 72 59.27 d.9.1.1 37357 1bgpA 309 59.68 a.93.1.1 18690 1nfvA 179 60.84 a.25.1.1 85642 1txdA 385 65.25 a.87.1.1,b.55.1.1 107422,107423 1r6fA 310 65.92 e.46.1.1 97149 2q4xA 221 67.48 a.132.1.3 139880 1v04A 355 67.71 b.68.6.2 100240 1k94A 165 67.86 a.39.1.8 68333 1qwnA 1045 68.23 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1pieA 419 68.83 d.14.1.5,d.58.26.7 94706,94707 2boqA 331 69.45 1hqvA 191 71.16 a.39.1.8 61160 1d0yA 761 71.31 b.34.3.1,c.37.1.9 24581,32178 2q9rA 200 71.80 1l8aA 886 71.82 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2o3lA 85 74.25 1j1nA 492 74.46 c.94.1.1 83978 1utg 70 75.00 1t13A 158 76.23 1p2xA 159 76.47 a.40.1.1 104062 2v3vA 723 76.62 1b71A 191 76.69 a.25.1.1,g.41.5.1 16647,45246 1f6dA 376 77.91 c.87.1.3 35467 1d8cA 723 80.95 c.1.13.1 29325 1qv1A 195 81.04 a.39.1.5 96347 2pfxA 191 81.53 1csh 435 82.06 1dhnA 121 83.38 d.96.1.3 40663 1gw5A 621 84.10 a.118.1.10 70629 2vroA 532 84.84 1rtwA 220 85.12 a.132.1.3 97823 1aru 344 85.69 1aquA 297 86.06 c.37.1.5 31942 1e8yA 966 86.47 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1y66A 52 86.56 2bv6A 142 87.28 2bsqE 77 88.18 a.43.1.8 129102 1hbnB 442 89.17 a.89.1.1,d.58.31.2 60900,60901 1p9cA 45 89.88 j.105.1.1 94386