# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 6.56e-43 a.25.1.2 63142 2rccA 346 3.03e-42 1xsm 390 4.32e-42 1w68A 390 4.54e-42 a.25.1.2 109216 1av8A 340 1.07e-41 a.25.1.2 16796 1biqA 375 1.57e-41 a.25.1.2 16786 1mxrA 375 1.76e-41 a.25.1.2 85197 1ribA 375 3.39e-41 a.25.1.2 16788 1xikA 375 6.28e-41 a.25.1.2 16784 1syyA 346 9.45e-41 a.25.1.2 106126 1kgnA 329 2.59e-40 a.25.1.2 68584 1r2fA 319 1.37e-39 a.25.1.2 16800 1jk0B 345 1.68e-37 a.25.1.2 63143 1t0qA 498 0.000298 a.25.1.2 106220 2oc5A 244 0.000645 1t0qB 330 0.001381 a.25.1.2 106221 2incA 491 0.004372 a.25.1.2 137524 2inpA 494 0.005264 1mtyD 512 0.007403 a.25.1.2 16742 1za0A 275 0.01082 a.25.1.2 124774 1mhyD 521 0.01101 a.25.1.2 16780 1mhyB 395 0.01953 a.25.1.2 16781 2incB 322 0.08798 a.25.1.2 137525 1afrA 345 0.2287 a.25.1.2 16805 2uw1A 338 0.3666 1oq9A 363 0.4116 a.25.1.2 87257 2j2fA 363 0.8619 2cwlA 302 1.035 a.25.1.3 130927 1o9iA 266 1.054 a.25.1.3 92671 1jkvA 266 1.361 a.25.1.3 71719 2jcdA 345 2.319 1hd7A 318 3.213 d.151.1.1 41780 1wwmA 190 3.423 a.132.1.3 121363 1ji6A 589 4.560 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2itbA 206 4.823 1zpyA 95 5.005 a.25.1.5 125479 1bix 287 5.124 1c4oA 664 5.541 c.37.1.19,c.37.1.19 32415,32416 1rcwA 231 5.881 a.132.1.4 97299 1w99A 558 6.669 1bi0 226 6.720 1uelB 48 7.378 j.105.1.1 99266 2ejnA 153 7.465 a.101.1.1,a.101.1.1 132279,132280 3chhA 336 7.905 1h0aA 158 8.604 a.118.9.1 76434 1sz9A 144 8.916 a.118.9.4 106139 1puoA 170 9.361 a.101.1.1,a.101.1.1 95134,95135 1dn1B 267 10.04 a.47.2.1 17771 1v4vA 376 10.27 c.87.1.3 100313 2q4xA 221 10.74 a.132.1.3 139880 1zkrA 153 12.97 a.101.1.1,a.101.1.1 125209,125210 2oixA 186 13.51 2f2gA 221 14.97 a.132.1.3 132816 1yakA 263 15.29 a.132.1.3 122833 2o3lA 85 22.77 1icwA 72 23.68 d.9.1.1 37357 2exrA 524 24.06 1eyhA 144 24.39 a.118.9.1 19214 1tyhA 248 25.61 a.132.1.3 107458 2nw5A 360 25.61 1oxjA 173 25.74 a.60.1.2,a.118.1.13 87517,87518 1p9cA 45 26.87 j.105.1.1 94386 1b04A 318 27.06 d.142.2.2 41579 1lox 662 28.38 1aquA 297 29.46 c.37.1.5 31942 2o4tA 100 30.00 1dhnA 121 30.73 d.96.1.3 40663 2i3fA 224 31.23 3by7A 100 31.97 2j1oA 268 32.08 1elqA 390 32.80 c.67.1.3 34436 1uddA 226 33.17 a.132.1.3 107776 1ezfA 340 34.57 a.128.1.2 19440 2oy0A 262 36.26 2yzsA 315 36.86 1wvfA 520 39.86 d.58.32.1,d.145.1.1 121337,121338 1nfvA 179 40.19 a.25.1.1 85642 1u8sA 192 40.27 d.58.18.5,d.58.18.5 107737,107738 1ng6A 148 43.27 a.182.1.1 85670 1qhhA 167 43.66 c.37.1.19 32393 1z72A 225 44.94 a.132.1.3 124583 1rh5C 53 45.07 f.23.29.1 97466 1gc5A 467 45.16 c.72.1.3 60429 1twiA 434 45.18 b.49.2.3,c.1.6.1 107399,107400 1gmxA 108 46.05 c.46.1.3 65355 1cwyA 500 46.36 c.1.8.1 28789 1w30A 201 47.31 c.61.1.1 114118 1jcfA 344 51.08 c.55.1.1,c.55.1.1 62878,62879 2bsqE 77 51.83 a.43.1.8 129102 2dtr 226 52.17 2ddmA 283 52.20 2j7zA 68 52.82 d.9.1.1 138131 1utg 70 54.61 1nd6A 354 54.73 c.60.1.2 80407 2yziA 138 56.39 2bqxA 173 57.33 1pyfA 312 57.95 c.1.7.1 95334 1ywfA 296 58.42 c.45.1.5 124144 2vd6A 503 59.01 2aplA 157 59.14 a.258.1.1 127132 1knzA 164 59.32 e.34.1.1 68709 1dmtA 696 59.99 d.92.1.4 40296 2b6cA 220 62.44 a.118.1.17 127983 2qzcA 214 62.75 2oa6A 320 64.83 1kbuA 349 64.89 a.60.9.1,d.163.1.1 72284,72285 1inzA 148 65.16 a.118.9.1 62610 1r4cA 110 65.48 d.17.1.2 104793 1y66A 52 65.72 1eduA 149 66.59 a.118.9.1 19215 1tufA 434 71.46 b.49.2.3,c.1.6.1 107335,107336 1ciy 590 73.57 1xgwA 176 74.38 1otkA 249 75.22 a.25.1.2 93521 1g96A 120 76.26 d.17.1.2 60393 1t0tV 248 78.78 d.58.4.10 106229 5eauA 548 81.05 a.102.4.1,a.128.1.3 18851,19443 1m7sA 484 82.30 e.5.1.1 74574 1uw0A 117 85.59 g.39.1.12 108063 1t1uA 639 86.80 c.43.1.3,c.43.1.3 119110,119111 2cs2A 134 88.17 1di1A 300 88.94 a.128.1.4 19446 2c43A 323 89.35