# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 3.75e-48 a.25.1.2 63142 2rccA 346 8.64e-47 1xsm 390 1.05e-46 1w68A 390 1.24e-46 a.25.1.2 109216 1av8A 340 1.65e-46 a.25.1.2 16796 1biqA 375 1.81e-46 a.25.1.2 16786 1mxrA 375 2.93e-46 a.25.1.2 85197 1ribA 375 3.83e-46 a.25.1.2 16788 1xikA 375 8.73e-46 a.25.1.2 16784 1syyA 346 1.52e-45 a.25.1.2 106126 1kgnA 329 1.49e-44 a.25.1.2 68584 1r2fA 319 5.45e-44 a.25.1.2 16800 1jk0B 345 4.26e-42 a.25.1.2 63143 1t0qA 498 8.92e-06 a.25.1.2 106220 1t0qB 330 0.000171 a.25.1.2 106221 2inpA 494 0.000222 2incA 491 0.000666 a.25.1.2 137524 1mhyD 521 0.000713 a.25.1.2 16780 2oc5A 244 0.000730 1mtyD 512 0.001391 a.25.1.2 16742 1mhyB 395 0.005018 a.25.1.2 16781 2incB 322 0.01496 a.25.1.2 137525 1za0A 275 0.02432 a.25.1.2 124774 1oq9A 363 0.3207 a.25.1.2 87257 1afrA 345 0.4685 a.25.1.2 16805 2uw1A 338 0.9598 2j2fA 363 2.000 1o9iA 266 2.916 a.25.1.3 92671 1uddA 226 3.567 a.132.1.3 107776 1jkvA 266 3.889 a.25.1.3 71719 1c4oA 664 4.124 c.37.1.19,c.37.1.19 32415,32416 1rcwA 231 4.408 a.132.1.4 97299 1gc5A 467 4.554 c.72.1.3 60429 2cwlA 302 5.657 a.25.1.3 130927 2oy0A 262 6.571 2itbA 206 6.703 1wwmA 190 6.796 a.132.1.3 121363 1bi0 226 7.114 1hd7A 318 8.502 d.151.1.1 41780 1oxjA 173 9.575 a.60.1.2,a.118.1.13 87517,87518 1sz9A 144 14.23 a.118.9.4 106139 1bix 287 17.14 1w99A 558 17.59 1uelB 48 20.58 j.105.1.1 99266 2vglA 621 21.53 1zpyA 95 23.11 a.25.1.5 125479 2q4xA 221 23.35 a.132.1.3 139880 2oixA 186 24.89 1b04A 318 25.10 d.142.2.2 41579 1l2lA 457 25.46 c.72.1.3 77656 2j1oA 268 25.76 2jcdA 345 25.85 1h0aA 158 29.04 a.118.9.1 76434 1p9cA 45 29.19 j.105.1.1 94386 2o3lA 85 31.00 1qhhA 167 32.56 c.37.1.19 32393 2j7zA 68 32.62 d.9.1.1 138131 1icwA 72 32.84 d.9.1.1 37357 1yp2A 451 34.95 b.81.1.4,c.68.1.6 123798,123799 1m12A 84 36.27 a.64.1.1 84745 1dhnA 121 36.40 d.96.1.3 40663 1jcfA 344 40.74 c.55.1.1,c.55.1.1 62878,62879 2f2gA 221 41.15 a.132.1.3 132816 1rr7A 129 42.58 a.4.1.14 105075 1ji6A 589 42.66 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1nd6A 354 44.03 c.60.1.2 80407 2exrA 524 45.19 2nw5A 360 46.02 3bqwA 351 46.55 1wkbA 810 46.98 1aquA 297 47.30 c.37.1.5 31942 1inzA 148 47.69 a.118.9.1 62610 1of9A 77 49.34 a.64.1.4 92821 1v4vA 376 49.93 c.87.1.3 100313 2ou3A 161 51.56 1y8qB 640 52.09 1zkrA 153 52.89 a.101.1.1,a.101.1.1 125209,125210 1y66A 52 54.74 2qypA 91 55.74 1rh5C 53 59.12 f.23.29.1 97466 2yziA 138 60.19 2ngrB 234 61.59 a.116.1.1 19105 1fu1A 203 61.99 b.59.1.1,h.1.11.1 27076,45630 1lox 662 63.96 2o4tA 100 65.23 1ji8A 111 65.39 d.203.1.1 66733 1nfvA 179 65.62 a.25.1.1 85642 3by7A 100 68.52 2ftuA 118 69.95 a.13.1.1 134082 1d2vC 466 70.88 2uuiA 156 71.60 2dtr 226 73.14 1ta8A 332 75.61 d.142.2.2 112375 2i3fA 224 78.43 1lj9A 144 78.75 a.4.5.28 78035 1e8yA 966 78.83 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1yakA 263 79.48 a.132.1.3 122833 2ejnA 153 79.70 a.101.1.1,a.101.1.1 132279,132280 1fx7A 230 80.71 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1l8aA 886 81.14 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2yzsA 315 81.44 1napA 70 83.45 d.9.1.1 37445 2vklA 90 83.71 1eyhA 144 83.85 a.118.9.1 19214 1w30A 201 84.02 c.61.1.1 114118 1otkA 249 85.13 a.25.1.2 93521 2b1wA 127 85.52 2dobA 83 86.12 2vhbA 146 87.86 a.1.1.2 15629