# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 1.26e-48 a.25.1.2 63142 1xsm 390 2.62e-47 1w68A 390 2.70e-47 a.25.1.2 109216 2rccA 346 3.16e-47 1av8A 340 4.77e-47 a.25.1.2 16796 1biqA 375 6.17e-47 a.25.1.2 16786 1mxrA 375 6.68e-47 a.25.1.2 85197 1ribA 375 1.52e-46 a.25.1.2 16788 1syyA 346 2.48e-46 a.25.1.2 106126 1xikA 375 2.93e-46 a.25.1.2 16784 1kgnA 329 3.34e-45 a.25.1.2 68584 1r2fA 319 1.42e-44 a.25.1.2 16800 1jk0B 345 8.30e-43 a.25.1.2 63143 1t0qA 498 3.11e-06 a.25.1.2 106220 1t0qB 330 3.87e-05 a.25.1.2 106221 2oc5A 244 9.78e-05 1mhyD 521 0.000126 a.25.1.2 16780 1mtyD 512 0.000161 a.25.1.2 16742 2incA 491 0.000207 a.25.1.2 137524 2inpA 494 0.000326 1mhyB 395 0.001211 a.25.1.2 16781 2incB 322 0.005924 a.25.1.2 137525 1za0A 275 0.01089 a.25.1.2 124774 1afrA 345 0.2651 a.25.1.2 16805 1oq9A 363 0.4745 a.25.1.2 87257 1o9iA 266 0.5744 a.25.1.3 92671 2uw1A 338 0.6415 1jkvA 266 0.6791 a.25.1.3 71719 2cwlA 302 0.7641 a.25.1.3 130927 2j2fA 363 1.283 2itbA 206 1.657 1uddA 226 1.904 a.132.1.3 107776 1wwmA 190 1.922 a.132.1.3 121363 1rcwA 231 2.568 a.132.1.4 97299 1bi0 226 3.327 1zpyA 95 3.835 a.25.1.5 125479 1hd7A 318 4.456 d.151.1.1 41780 2f2gA 221 4.481 a.132.1.3 132816 1sz9A 144 4.627 a.118.9.4 106139 2q4xA 221 5.410 a.132.1.3 139880 2jcdA 345 5.654 1c4oA 664 6.117 c.37.1.19,c.37.1.19 32415,32416 1bix 287 8.923 1uelB 48 9.359 j.105.1.1 99266 1p9cA 45 11.91 j.105.1.1 94386 1puoA 170 12.12 a.101.1.1,a.101.1.1 95134,95135 2vglA 621 12.12 2o3lA 85 12.31 1oxjA 173 13.85 a.60.1.2,a.118.1.13 87517,87518 2ftuA 118 16.31 a.13.1.1 134082 2oy0A 262 17.31 1zkrA 153 17.45 a.101.1.1,a.101.1.1 125209,125210 1h0aA 158 18.38 a.118.9.1 76434 2nw5A 360 18.85 2oixA 186 18.93 1jcfA 344 19.77 c.55.1.1,c.55.1.1 62878,62879 1ji6A 589 20.62 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1yakA 263 22.09 a.132.1.3 122833 1v4vA 376 22.17 c.87.1.3 100313 2j7zA 68 23.40 d.9.1.1 138131 1aquA 297 23.46 c.37.1.5 31942 2o4tA 100 23.51 1inzA 148 24.37 a.118.9.1 62610 1qhhA 167 25.90 c.37.1.19 32393 1fu1A 203 26.48 b.59.1.1,h.1.11.1 27076,45630 1dn1B 267 26.60 a.47.2.1 17771 2ejnA 153 27.86 a.101.1.1,a.101.1.1 132279,132280 1rh5C 53 28.65 f.23.29.1 97466 3by7A 100 29.26 2vklA 90 32.16 1icwA 72 32.23 d.9.1.1 37357 2uuiA 156 34.72 2yziA 138 36.21 1fx7A 230 37.57 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3bqwA 351 38.16 2vkhA 546 38.91 2cs2A 134 39.34 1gmxA 108 42.47 c.46.1.3 65355 1kf6C 130 45.43 f.21.2.2 72399 2j1oA 268 46.38 1dhnA 121 47.20 d.96.1.3 40663 1mgsA 73 47.87 d.9.1.1 37389 1zrhA 274 48.04 2vd6A 503 48.63 1y66A 52 49.55 1wkbA 810 52.04 1w99A 558 52.51 1b6aA 478 52.61 a.4.5.25,d.127.1.1 16223,41160 1m12A 84 53.36 a.64.1.1 84745 1rtwA 220 53.46 a.132.1.3 97823 1b04A 318 53.91 d.142.2.2 41579 1lox 662 54.47 2exrA 524 54.50 1ta8A 332 55.39 d.142.2.2 112375 1e8yA 966 56.76 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1ywfA 296 56.77 c.45.1.5 124144 1gc5A 467 58.01 c.72.1.3 60429 1uw0A 117 58.85 g.39.1.12 108063 1b6a 478 58.90 1eyhA 144 59.89 a.118.9.1 19214 1ezfA 340 62.32 a.128.1.2 19440 1yppA 286 62.53 b.40.5.1 25407 1ng6A 148 63.14 a.182.1.1 85670 1wy5A 317 63.77 c.26.2.5,d.229.1.1 121428,121429 1xgwA 176 64.71 2bqxA 173 66.15 2i3fA 224 66.67 1bn5 478 68.75 1wu2A 396 69.10 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2ib0A 170 72.47 2zcoA 293 73.51 2j91A 503 74.44 1m7sA 484 74.46 e.5.1.1 74574 1nfvA 179 76.31 a.25.1.1 85642 2p3xA 339 77.38 1ekjA 221 78.53 c.53.2.1 33364 2bsqE 77 80.60 a.43.1.8 129102 2okjA 504 83.57 1g0yI 21 86.28 k.19.1.1 46448 1nd6A 354 86.67 c.60.1.2 80407 8prkA 287 87.29 b.40.5.1 25395